Csa4G614190.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G614190.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19459376 .. 19462589 (-)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAAACCATGTAAGAGTAGAAAGAGATTTGATGTATGTCATACAGATTAAGATGATTATCATTTAATGTGTTGCTATTGTTCTTATAAAAAATGTTATAATTAAGGAAAGTGAAATAAGACAAAGGATACGAGTGTGACCATCAATATTGATTAAAATATAGCAAAACAAACTAAATTTTTTTTAGAAAAATACACCAAAAATTTCTAATTATATCCAAATATTTCCAACTTAATTTTAAAAAAATTCCAAACAACTTTCTTTTAAAAGATAAAAAATAGGTATGCATTAAATTTTTGAAAGGAGTTTGTAACAATTACTACTTGGTGGAATAAAAGTGTATTTTTTTTCTAAATATACTTCAAACTTATCCACAGTTATAGAAAAACAGTTACAATCTTTTGTTTAGTTTGTTACCAATTTATTAGTTTGTTTATTTTTTCTAATGATTTATCCCATAAATTTAAATACTACTTTGATTTATACATTTTAAAAGGATTATTTTAGTTTTTATATTTTAAAAACGTTTATTTTAGTTATTGTACTCCTGACTTCATCCTATAGTTATTGTGTTGAAGGGTGAATTGATAAAGGAAGATAATATGAAATTAGAGATGATTTAATTTAAGTTGTTTAGATTAAGAAATTTTATATGTTATTGGAAGATGAATAAAATCTTATGTAAATACATATTTTTTAAAATTTTATATGTGGTAATTAAGAGTTGGTAAAAAGAAATAAAATTATTGTAAGAGATAAAAAAAGAAAGAAATTTAATTTTAAAAGCTAAAATGATTTGGATTGAAAATTTAACGACGAAAAAAAACGGAAGTCAAAAGTAGAGAAACAAAAAAGCTATTTAAAGTTAAGAAATGAAAATAATAAGAGTGGATTTGTCTGGAAGGTTCGTATCGTAGTGGTTAACGCTAAGGAGCGCAGCGTAGCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGAGTTTTTATGGTTTTTGTGATCATCTTTTGTCATTTTTTGCTTATCGATTTGTTTTGGTTGATTTTCTGATCAAACGCGCATTTCTGTGGTGTTTTTACTTCTATTTCATTCTCTATATGAGTTTTTTGTGTGCTTAATTCTCGTTTTTGTTTTGTTTTGTTGATTTTTTTGGTTTATGTTCTTTTGCTTTATAACTTGATGTCGGAATTTATCCTTTGTCAAACTTACTTATTGCCGTTGATGTTTTTGGACGATCTCCTTCGTCTTTCGATTTTCGCGATGAGTGTGAATTTGCATTCTACTTGGTTATTTCTTTCGTTTTTCAGTGTGATTGACTTTTCATTGGCTGCATTAGAAATTCATGACGGATTGACTTAACTTTGTGTAACTTGCGGATTGCTGTTGGTGTATTTTGACGATCTTCTTGGAGTTCCGATTTTCTTGATTAGTGTATAAATTTGAATTCTATTAGTTTTTTTATTCTATTAAAATTTATTGACGTATGTTTTCAATGTGATTGATATCTCTATAAGAGTTTAAATTAGACTGCCATTGTGAAACGTGCTGGTCACTGGTCCTTGGAAGTTGGACGTTCTCCTTTGTATTTCAGTTTTGTGATGAGTGGAAGTGTGAATTTTACATACGGTGGGACTCTGAAGCTAATTCACAATGTTTGTGTTTGGTAGTTTTGATCTTTCAGTTCTGAGGTTGTTATGTATTATCTATCTATCGTGTAGGACTTCATTGAACTGCAAGTTTATGATGGTTTAGGAGATGCTTTGTATATTCAGCCTGTGGTCTAAAGATTTTAGAAGCTTGGTTGTACTTGTTGTACATTTAGAGCTTTTGAATAAAAAGATTGTGATGTGTTATTAGAAAATTTGCAACATGCAATGTTGTTTTTACCGTGTCACAATCATCTTATCCTAGGTTTTAAATCTACTTAGCTTGTTGCATGCATCTGGAAGTTGGATGACTAAGCATTTGACCTCATAGTTCTAACATTTAAGTATTCGGCCAATTTTTTACCAGTAAAAATTGGAAATAAATTCTACACATGTTCGTTTGCTCCAATTTTGATTGAGCTGATTAGCCAAAAGGAACTACCTAAGGATCGAGAGCCAAGGGTGATCCCTCCTAAAGAGATTGTACGACAAAAAGGTTTTCCAATCTGTAATAGTAATGGAAAGATTTTATTACGAAAGACGTCTTTGTGATTTGAACTCCACCAAGAGGCCATATGTTGTATACTATAGACAAGAAGAAGTTTCAGTATTTCACGAATGGAATGAAATTTCTGCTTTGATCCTGCCAGCACACCAGTTCATGTGTCATCATGTTTGATTCTTTGTATTCTTTCTTTGGGGGTTTTAAGCAATCTTTCTACTTGGGGAATATTTGAGCATGAATACTAATATTACTTTGTGACTATTTAATTTATCTTCTGACCTGCTTCTTGCTCATTGGCGCATTATAGATTAAGAAGAATGTCAAGTGTTAACCCTTGTTAGATAACATAAAATTGTAATGAGAGATGTGACATTAAACCAAGTAAAATGCCATGGTTTGTACAAAGTTCTTTCAGTTTTGCAATAGAAGCAAAAGGATTCCACCTAGATGAGTTTTGGATGGTAGAACCACTCCATTGTTCTCTTGTAGAAAAGAGGGAAACTACTAATTAATTACAAAAGTAGAGCTTCTTAAGGAAGCCTTAAATTTGATAAACCTATAGTACCTCTCCCGTCCTAGTTCCTTAACTGGGATTCTGAGAGCACTCTGCCACAACTCCCTTGCCATCTGTTTGGATGAAACCTTTTGATTTGTAGTTCCTTCACTTCGCTTATTAGTCTCTCTTATTGTCTTGGGTTGACCTTTATAGAGTGGTGAATGAGAATGATGCTCTTGTCTTAACTCTGCCAATTATGTTTAGTTTTCCTCATTAGTTGGTTAAGATGGCTTACCTTTTACTTTGAAAACAGGTGTGAATAGGCAGAGAAGAAGTTAG

mRNA sequence

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Coding sequence (CDS)

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Protein sequence

MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLSTSLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS*
Homology
[Close]
BLAST of Csa4G614190.1 vs. TrEMBL
Match: A0A0A0KZ46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614190 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

[Close]
BLAST of Csa4G614190.1 vs. NCBI nr
Match: gi|700199787|gb|KGN54945.1| (hypothetical protein Csa_4G614190 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

The following BLAST results are available for this feature:
BLAST of Csa4G614190.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ46_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614190 PE=4 SV=1[more]
BLAST of Csa4G614190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199787|gb|KGN54945.1|2.1e-48100.00hypothetical protein Csa_4G614190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G614190Csa4G614190gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G614190.1Csa4G614190.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G614190.1.cds3Csa4G614190.1.cds3CDS
Csa4G614190.1.cds2Csa4G614190.1.cds2CDS
Csa4G614190.1.cds1Csa4G614190.1.cds1CDS