Csa4G614190 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G614190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 19459376 .. 19462589 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATCAAACCATGTAAGAGTAGAAAGAGATTTGATGTATGTCATACAGATTAAGATGATTATCATTTAATGTGTTGCTATTGTTCTTATAAAAAATGTTATAATTAAGGAAAGTGAAATAAGACAAAGGATACGAGTGTGACCATCAATATTGATTAAAATATAGCAAAACAAACTAAATTTTTTTTAGAAAAATACACCAAAAATTTCTAATTATATCCAAATATTTCCAACTTAATTTTAAAAAAATTCCAAACAACTTTCTTTTAAAAGATAAAAAATAGGTATGCATTAAATTTTTGAAAGGAGTTTGTAACAATTACTACTTGGTGGAATAAAAGTGTATTTTTTTTCTAAATATACTTCAAACTTATCCACAGTTATAGAAAAACAGTTACAATCTTTTGTTTAGTTTGTTACCAATTTATTAGTTTGTTTATTTTTTCTAATGATTTATCCCATAAATTTAAATACTACTTTGATTTATACATTTTAAAAGGATTATTTTAGTTTTTATATTTTAAAAACGTTTATTTTAGTTATTGTACTCCTGACTTCATCCTATAGTTATTGTGTTGAAGGGTGAATTGATAAAGGAAGATAATATGAAATTAGAGATGATTTAATTTAAGTTGTTTAGATTAAGAAATTTTATATGTTATTGGAAGATGAATAAAATCTTATGTAAATACATATTTTTTAAAATTTTATATGTGGTAATTAAGAGTTGGTAAAAAGAAATAAAATTATTGTAAGAGATAAAAAAAGAAAGAAATTTAATTTTAAAAGCTAAAATGATTTGGATTGAAAATTTAACGACGAAAAAAAACGGAAGTCAAAAGTAGAGAAACAAAAAAGCTATTTAAAGTTAAGAAATGAAAATAATAAGAGTGGATTTGTCTGGAAGGTTCGTATCGTAGTGGTTAACGCTAAGGAGCGCAGCGTAGCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGAGTTTTTATGGTTTTTGTGATCATCTTTTGTCATTTTTTGCTTATCGATTTGTTTTGGTTGATTTTCTGATCAAACGCGCATTTCTGTGGTGTTTTTACTTCTATTTCATTCTCTATATGAGTTTTTTGTGTGCTTAATTCTCGTTTTTGTTTTGTTTTGTTGATTTTTTTGGTTTATGTTCTTTTGCTTTATAACTTGATGTCGGAATTTATCCTTTGTCAAACTTACTTATTGCCGTTGATGTTTTTGGACGATCTCCTTCGTCTTTCGATTTTCGCGATGAGTGTGAATTTGCATTCTACTTGGTTATTTCTTTCGTTTTTCAGTGTGATTGACTTTTCATTGGCTGCATTAGAAATTCATGACGGATTGACTTAACTTTGTGTAACTTGCGGATTGCTGTTGGTGTATTTTGACGATCTTCTTGGAGTTCCGATTTTCTTGATTAGTGTATAAATTTGAATTCTATTAGTTTTTTTATTCTATTAAAATTTATTGACGTATGTTTTCAATGTGATTGATATCTCTATAAGAGTTTAAATTAGACTGCCATTGTGAAACGTGCTGGTCACTGGTCCTTGGAAGTTGGACGTTCTCCTTTGTATTTCAGTTTTGTGATGAGTGGAAGTGTGAATTTTACATACGGTGGGACTCTGAAGCTAATTCACAATGTTTGTGTTTGGTAGTTTTGATCTTTCAGTTCTGAGGTTGTTATGTATTATCTATCTATCGTGTAGGACTTCATTGAACTGCAAGTTTATGATGGTTTAGGAGATGCTTTGTATATTCAGCCTGTGGTCTAAAGATTTTAGAAGCTTGGTTGTACTTGTTGTACATTTAGAGCTTTTGAATAAAAAGATTGTGATGTGTTATTAGAAAATTTGCAACATGCAATGTTGTTTTTACCGTGTCACAATCATCTTATCCTAGGTTTTAAATCTACTTAGCTTGTTGCATGCATCTGGAAGTTGGATGACTAAGCATTTGACCTCATAGTTCTAACATTTAAGTATTCGGCCAATTTTTTACCAGTAAAAATTGGAAATAAATTCTACACATGTTCGTTTGCTCCAATTTTGATTGAGCTGATTAGCCAAAAGGAACTACCTAAGGATCGAGAGCCAAGGGTGATCCCTCCTAAAGAGATTGTACGACAAAAAGGTTTTCCAATCTGTAATAGTAATGGAAAGATTTTATTACGAAAGACGTCTTTGTGATTTGAACTCCACCAAGAGGCCATATGTTGTATACTATAGACAAGAAGAAGTTTCAGTATTTCACGAATGGAATGAAATTTCTGCTTTGATCCTGCCAGCACACCAGTTCATGTGTCATCATGTTTGATTCTTTGTATTCTTTCTTTGGGGGTTTTAAGCAATCTTTCTACTTGGGGAATATTTGAGCATGAATACTAATATTACTTTGTGACTATTTAATTTATCTTCTGACCTGCTTCTTGCTCATTGGCGCATTATAGATTAAGAAGAATGTCAAGTGTTAACCCTTGTTAGATAACATAAAATTGTAATGAGAGATGTGACATTAAACCAAGTAAAATGCCATGGTTTGTACAAAGTTCTTTCAGTTTTGCAATAGAAGCAAAAGGATTCCACCTAGATGAGTTTTGGATGGTAGAACCACTCCATTGTTCTCTTGTAGAAAAGAGGGAAACTACTAATTAATTACAAAAGTAGAGCTTCTTAAGGAAGCCTTAAATTTGATAAACCTATAGTACCTCTCCCGTCCTAGTTCCTTAACTGGGATTCTGAGAGCACTCTGCCACAACTCCCTTGCCATCTGTTTGGATGAAACCTTTTGATTTGTAGTTCCTTCACTTCGCTTATTAGTCTCTCTTATTGTCTTGGGTTGACCTTTATAGAGTGGTGAATGAGAATGATGCTCTTGTCTTAACTCTGCCAATTATGTTTAGTTTTCCTCATTAGTTGGTTAAGATGGCTTACCTTTTACTTTGAAAACAGGTGTGAATAGGCAGAGAAGAAGTTAG

mRNA sequence

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Coding sequence (CDS)

ATGATATCAAACCATCGTGAGAAAAGAAGACACTATTGCTTTGGGCCCAATTACCTGACCCTAATCCTTCCCTCTCTCTTTCTTCCATTCCTAACAGAAATTTCTTTTCCTCTTTCTATTGCCTTCTTCTCTTCTTCCCCATTTTCATTATCATTCCCATTTTCCGCCTTTCTTTCTACTTCTCTTTCTTCCTCCTTTAATCCTTCTCCGCTCTTCTTATTGCTTCCTGATTCTTCTCCGCCGCGTCTCCACGTTTTCCGCCGATTTTCCGGTGTGAATAGGCAGAGAAGAAGTTAG

Protein sequence

MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLSTSLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS*
Homology
[Close]
BLAST of Csa4G614190 vs. TrEMBL
Match: A0A0A0KZ46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614190 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

[Close]
BLAST of Csa4G614190 vs. NCBI nr
Match: gi|700199787|gb|KGN54945.1| (hypothetical protein Csa_4G614190 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60
          MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST
Sbjct: 1  MISNHREKRRHYCFGPNYLTLILPSLFLPFLTEISFPLSIAFFSSSPFSLSFPFSAFLST 60

Query: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 99
          SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS
Sbjct: 61 SLSSSFNPSPLFLLLPDSSPPRLHVFRRFSGVNRQRRS 98

The following BLAST results are available for this feature:
BLAST of Csa4G614190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ46_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614190 PE=4 SV=1[more]
BLAST of Csa4G614190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199787|gb|KGN54945.1|2.1e-48100.00hypothetical protein Csa_4G614190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161947cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G614190.1Csa4G614190.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161947CU161947transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G614190Watermelon (97103) v2cuwmbB279
Csa4G614190Wax gourdcuwgoB419
Csa4G614190Cucumber (Gy14) v1cgycuB042
Csa4G614190Cucurbita maxima (Rimu)cmacuB025
Csa4G614190Cucurbita maxima (Rimu)cmacuB467
Csa4G614190Cucurbita moschata (Rifu)cmocuB016
Csa4G614190Cucurbita moschata (Rifu)cmocuB455
Csa4G614190Melon (DHL92) v3.5.1cumeB306
Csa4G614190Watermelon (Charleston Gray)cuwcgB279
Csa4G614190Watermelon (97103) v1cuwmB349
Csa4G614190Cucurbita pepo (Zucchini)cpecuB573
Csa4G614190Cucurbita pepo (Zucchini)cpecuB786
Csa4G614190Bottle gourd (USVL1VR-Ls)culsiB283
Csa4G614190Cucumber (Gy14) v2cgybcuB166
Csa4G614190Melon (DHL92) v3.6.1cumedB291
Csa4G614190Melon (DHL92) v3.6.1cumedB307
Csa4G614190Silver-seed gourdcarcuB0660
Csa4G614190Silver-seed gourdcarcuB1060