Csa4G526570.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G526570.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 18053403 .. 18053841 (-)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGTCTCCCCACTTTATGTGGGTATATATATAGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCGTATATTGAATCATTAGCAACCCCCTCTTTATCGATCGTCAAAAAGATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTCTAACTGCCCAGCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

mRNA sequence

ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

Coding sequence (CDS)

ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

Protein sequence

MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQGFARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA*
Homology
[Close]
BLAST of Csa4G526570.1 vs. TrEMBL
Match: A0A0A0L2K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526570 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60
           MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG
Sbjct: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60

Query: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 105
           FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA
Sbjct: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 104

[Close]
BLAST of Csa4G526570.1 vs. NCBI nr
Match: gi|700199679|gb|KGN54837.1| (hypothetical protein Csa_4G526570 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.3e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60
           MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG
Sbjct: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60

Query: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 105
           FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA
Sbjct: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 104

The following BLAST results are available for this feature:
BLAST of Csa4G526570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2K1_CUCSA3.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526570 PE=4 SV=1[more]
BLAST of Csa4G526570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199679|gb|KGN54837.1|4.3e-52100.00hypothetical protein Csa_4G526570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G526570Csa4G526570gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G526570.1Csa4G526570.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G526570.1.cds3Csa4G526570.1.cds3CDS
Csa4G526570.1.cds2Csa4G526570.1.cds2CDS
Csa4G526570.1.cds1Csa4G526570.1.cds1CDS