Csa4G526570 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G526570
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 18053403 .. 18053841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGTCTCCCCACTTTATGTGGGTATATATATAGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCGTATATTGAATCATTAGCAACCCCCTCTTTATCGATCGTCAAAAAGATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTCTAACTGCCCAGCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

mRNA sequence

ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

Coding sequence (CDS)

ATGAAGCTGCTTAAACCTCTGCGGTCAGTCCTTCGGACCAGGTGCCATAAGACAGGGATATTGTTAGGCGCAAAGAATATTGCGACTTTGAATACGAGCCTTTTCCCAGCTATCAACCTAGCCATTCGAGCTTCTTGCTTTAAGGGGCTTCGTCGAGAATACCAAGTCGATCGGCAAGGTTTCGCTCGTCCTGTGAGGGAGGAAGGGTGGAGGGATACCTCTCGGCCCTTTTTCCATATACCTTTACTAACTCCACAGCTGCTCCCTCAGTGCACTGCTATGCAGAGCGGAGGTTCAAAGAAGATTTCCGCTTGA

Protein sequence

MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQGFARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA*
Homology
[Close]
BLAST of Csa4G526570 vs. TrEMBL
Match: A0A0A0L2K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526570 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60
           MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG
Sbjct: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60

Query: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 105
           FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA
Sbjct: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 104

[Close]
BLAST of Csa4G526570 vs. NCBI nr
Match: gi|700199679|gb|KGN54837.1| (hypothetical protein Csa_4G526570 [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 4.3e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60
           MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG
Sbjct: 1   MKLLKPLRSVLRTRCHKTGILLGAKNIATLNTSLFPAINLAIRASCFKGLRREYQVDRQG 60

Query: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 105
           FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA
Sbjct: 61  FARPVREEGWRDTSRPFFHIPLLTPQLLPQCTAMQSGGSKKISA 104

The following BLAST results are available for this feature:
BLAST of Csa4G526570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2K1_CUCSA3.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G526570 PE=4 SV=1[more]
BLAST of Csa4G526570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199679|gb|KGN54837.1|4.3e-52100.00hypothetical protein Csa_4G526570 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU085332cucumber EST collection version 3.0transcribed_cluster
CU092290cucumber EST collection version 3.0transcribed_cluster
CU108863cucumber EST collection version 3.0transcribed_cluster
CU162982cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G526570.1Csa4G526570.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU085332CU085332transcribed_cluster
CU092290CU092290transcribed_cluster
CU108863CU108863transcribed_cluster
CU162982CU162982transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G526570Melon (DHL92) v3.6.1cumedB321
Csa4G526570Silver-seed gourdcarcuB0309
Csa4G526570Watermelon (97103) v2cuwmbB297
Csa4G526570Watermelon (97103) v2cuwmbB301
Csa4G526570Wax gourdcuwgoB397
Csa4G526570Cucumber (Gy14) v1cgycuB501
Csa4G526570Cucurbita maxima (Rimu)cmacuB861
Csa4G526570Cucurbita moschata (Rifu)cmocuB658
Csa4G526570Cucurbita moschata (Rifu)cmocuB849
Csa4G526570Melon (DHL92) v3.5.1cumeB332
Csa4G526570Watermelon (Charleston Gray)cuwcgB303
Csa4G526570Watermelon (97103) v1cuwmB341
Csa4G526570Cucurbita pepo (Zucchini)cpecuB498
Csa4G526570Bottle gourd (USVL1VR-Ls)culsiB259
Csa4G526570Cucumber (Gy14) v2cgybcuB166