Csa4G499320.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G499320.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 17446826 .. 17447147 (-)
Sequence length225
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGGTTCAAGACACTGAGGCTTGGGATTTGCAACTTTGTCAAAATCTAAATGATTTAGAATCTATTGAGTGGGCTGCTTTGTCCCTTTTGTTACCTTCAGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

mRNA sequence

ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

Coding sequence (CDS)

ATGGCTTCCTTGTGCGCTACAGTATCTGTACAGCTTTTCCTCATCTGTTCAGGCTTACTCGCTCCCATGATGCTAGGGTTGTTGATGTTTGGTCCATCTCCGCCTTTGCTTGATTCTTGGATTCGGACCATTGATCCTTCCTCCACATTTACTGTTAAATCTCTTATGGATGATTTGGTGGGATCTATTGACTTTCATGTTAAGGAATTTTATTCTGCTATTTAA

Protein sequence

MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLVGSIDFHVKEFYSAI*
Homology
[Close]
BLAST of Csa4G499320.1 vs. TrEMBL
Match: A0A0A0KYN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499320 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV
Sbjct: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSAI 75
          GSIDFHVKEFYSAI
Sbjct: 61 GSIDFHVKEFYSAI 74

[Close]
BLAST of Csa4G499320.1 vs. NCBI nr
Match: gi|700199637|gb|KGN54795.1| (hypothetical protein Csa_4G499320 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60
          MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV
Sbjct: 1  MASLCATVSVQLFLICSGLLAPMMLGLLMFGPSPPLLDSWIRTIDPSSTFTVKSLMDDLV 60

Query: 61 GSIDFHVKEFYSAI 75
          GSIDFHVKEFYSAI
Sbjct: 61 GSIDFHVKEFYSAI 74

The following BLAST results are available for this feature:
BLAST of Csa4G499320.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYN5_CUCSA1.3e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G499320 PE=4 SV=1[more]
BLAST of Csa4G499320.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199637|gb|KGN54795.1|1.9e-33100.00hypothetical protein Csa_4G499320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G499320Csa4G499320gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G499320.1Csa4G499320.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G499320.1.cds2Csa4G499320.1.cds2CDS
Csa4G499320.1.cds1Csa4G499320.1.cds1CDS