Csa4G288110.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAACTGTAGATTCATTATCAGAAGTCAGAAGTATGGAGTTTTATGTGCCACGAGATGAAGCGTTCTCCATATCAAAACAGGGAAATACATTGATGAAGGCATTTAATTCCATGTTACATGGCTTCTTATTACCAGCTTTAGAGGACAACTTCAATAAACATTATTCCACTCTCTTTGAAACAAAACATGATCGTTCTCCTTGTCCTAAACTTGTTCAAATCCTTACTGATAAGGCCATGGATATCTTACTCTTGCATTCTTCGCAGACATCCTATGGTAAACATAACAACTTTATAATAATATATTTTGTCTTGTTTTATTTTATTTATTATATTGAGATGGAGTTTAATTTAATTTCTTCATTATTTTTCAGGGGACAAATTCTTTTGGTTTAGAGATGAGGAATTTGCTAGACAGACCCTTGCAGGTCTCAATCCGTATAGCATAAGACTTGTCACGGTACGACATGCAAGCTTGAATCATTTTACTTCCATAGTAAATAAAAATAAAAATTATCCAAGAAAGATACTTGGGTGGTTTCTTTTGTTTCTGTGGATGATAAAAGTAGGATATATAAAGATTAGTGCATCTTTGAGACGCACCTATAAAGTACTTTTTGATCTATGAATCATCTCTTTTGTAATCTCTTTTCTTGTCTATGAATCATCAGCACTTTAGGCCTTGGGGTGTGGTGAGGGTGTAAGGTGTAAGGTGATGTCAACCTAAGTTGAAATGTACGTCTTGATGCACTTTCGGATCTCTCTTACTTGCTGTGAATATTTTTTAAAAGAAAAAAAAAGAAAAAAAAAAGACATACCCAAGTATTGCTCAAGAATCATTATTGTATCTACCTGTGCAACACAAACTGCACATTAAAAGAGTTGTGAAGGTTTTTCTCAAAAAGAAGAGTTGCACAAGTTGTATCTTAAGTTTTCTTTCTTAAATTTTACAGTAACACACTTGTACCTCACAACATTTATAAGATATATACCAACAAATGATTAATATTCTTTATCGATTGATTTTGAGATGAAACTTTATAGTTTAATATTCAACAAAAATAAAAGTAAATATTATTAGTGAACCTAAAGAAACACTATCGATAATTGATATAACTTTGGAGTATAAATGAAAAGACTAATTATGCTAAAACAAAAATTTATCCAGGAATGGCCATTGAAGAGTAAGCTTGACCCTTCTATTTATGGTTCCCCTGAATCCGCAATCACTGATGAAATAGTTGAGCAACAAATAAAAGGAGTCATGAGTCTTGATGAGGTAATATATATTATATCAATATTAATATATATGGTTTCACTTAGATTATATTAATGATATAATTGTAGCAATTAATATTTGAATATGTATCATTTGTTTGTGAGAATGCAGGCATTGAAACAAAAGAAGTTATTTATATTAGATTATCATGATGTGTTCATACCATATGTAGCAAAGGTAAGAAAGCTGAAAGGGAGAACATTGTACGGTTCAAGAACATTATTTTTCTTAAACCCAGATAGCACTTTAAGGCCACTAGCTATTGAGCTGAGCAGACCACCCATTGATAACGAACCACAATGGAAAGATGTTTTCACACCATGTTGGGATGCCTATGGCCTTTGGCTTTGGAGGATCGCCAAAGCTCATGTTCTCGCTCATGACTCTGGTCATCACCAACTTATTACTCATTGGTCTGTATTAATTGATATGTTATTAAATTTTACTTGTACCAATTCAGCTGAAGTTTTTGGTTTTAATTGGTGATTTAAGAGTATATTTGTTGCAGGCTGAGAACTCATTGCTGCGTGGAACCTTATGTGATTGCTACACACAGACAACTAAGTGCAATGCATCCTATGTATAGACTATTGCATCCGCACCTTCGGTATACCATGGCGATCAATGCAGCGGCTAGGGAAGCCCTTATCAGTGTAGAAGGGCTTATTGAGAATATCTTCTCAACAGGAAAATATTCTATGGAAATTAGTTCCTTGGTCTATGACAAACAATGGCAATTCAACTTAGAAGCTTTACCTGCTGACTTAATTCACAGGTAATTTTATCTTTAAGACTGAAAAAACTAATGCAAAGTAACCTAACTCGATAAATATATTTTCATGCCTTAATCTCATACAAATATCAATTAAAACAAGGATAATTGTTTTAAGATATTCAAGAAGACTTAAAATACTAATGCATTTTTTATTTTCACTCTACTAAATTTTTATTTGTTTTTTTATTCTCTTTACCAATGTTTTCAAAGAGCAGAAATAATATTTTAAGAACTAAATTAACCATATTTAGTAGAGTGCATTTTTTTAAAAGAATATATAAGTTAATAGATGCATTCGAACATCTTTGCCAGGTAGACATAGCACCATCCTTATTTTTGTTTCATTAATATCAAAAAATAAGGACATGAACCAAGGAATGTCCAAAGAAAAGGACTAGAGAGTATAGCCCAACAAACCCAAATAATAGTTATTACAAAAGCATGAATGATTAATGCAATAGAACCTAGCCTACAAAAGTTTAATACAATAGAACTCGCCTATAAAATTAGCTCTACTACTCTAGAGGCCCGTGAGTACAAATTACCAATCGTTAACAAATGATCATATATGTTCTGTGCTTGTTCTTTAAAAGGGGATTAGCTGTTGA ATGTTAACTGTAGATTCATTATCAGAAGTCAGAAGTATGGAGTTTTATGTGCCACGAGATGAAGCGTTCTCCATATCAAAACAGGGAAATACATTGATGAAGGCATTTAATTCCATGTTACATGGCTTCTTATTACCAGCTTTAGAGGACAACTTCAATAAACATTATTCCACTCTCTTTGAAACAAAACATGATCGTTCTCCTTGTCCTAAACTTGTTCAAATCCTTACTGATAAGGCCATGGATATCTTACTCTTGCATTCTTCGCAGACATCCTATGGGGACAAATTCTTTTGGTTTAGAGATGAGGAATTTGCTAGACAGACCCTTGCAGGTCTCAATCCGTATAGCATAAGACTTGTCACGGAATGGCCATTGAAGAGTAAGCTTGACCCTTCTATTTATGGTTCCCCTGAATCCGCAATCACTGATGAAATAGTTGAGCAACAAATAAAAGGAGTCATGAGTCTTGATGAGGGGATTAGCTGTTGA ATGTTAACTGTAGATTCATTATCAGAAGTCAGAAGTATGGAGTTTTATGTGCCACGAGATGAAGCGTTCTCCATATCAAAACAGGGAAATACATTGATGAAGGCATTTAATTCCATGTTACATGGCTTCTTATTACCAGCTTTAGAGGACAACTTCAATAAACATTATTCCACTCTCTTTGAAACAAAACATGATCGTTCTCCTTGTCCTAAACTTGTTCAAATCCTTACTGATAAGGCCATGGATATCTTACTCTTGCATTCTTCGCAGACATCCTATGGGGACAAATTCTTTTGGTTTAGAGATGAGGAATTTGCTAGACAGACCCTTGCAGGTCTCAATCCGTATAGCATAAGACTTGTCACGGAATGGCCATTGAAGAGTAAGCTTGACCCTTCTATTTATGGTTCCCCTGAATCCGCAATCACTGATGAAATAGTTGAGCAACAAATAAAAGGAGTCATGAGTCTTGATGAGGGGATTAGCTGTTGA MLTVDSLSEVRSMEFYVPRDEAFSISKQGNTLMKAFNSMLHGFLLPALEDNFNKHYSTLFETKHDRSPCPKLVQILTDKAMDILLLHSSQTSYGDKFFWFRDEEFARQTLAGLNPYSIRLVTEWPLKSKLDPSIYGSPESAITDEIVEQQIKGVMSLDEGISC*
BLAST of Csa4G288110.1 vs. Swiss-Prot
Match: LOX21_SOLTU (Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 5.9e-32 Identity = 83/181 (45.86%), Postives = 107/181 (59.12%), Query Frame = 1
BLAST of Csa4G288110.1 vs. Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 3.0e-28 Identity = 78/180 (43.33%), Postives = 102/180 (56.67%), Query Frame = 1
BLAST of Csa4G288110.1 vs. Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 2.4e-25 Identity = 72/163 (44.17%), Postives = 93/163 (57.06%), Query Frame = 1
BLAST of Csa4G288110.1 vs. Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2) HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23 Identity = 76/180 (42.22%), Postives = 96/180 (53.33%), Query Frame = 1
BLAST of Csa4G288110.1 vs. Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23 Identity = 68/179 (37.99%), Postives = 92/179 (51.40%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TrEMBL
Match: A0A0A0KWY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288110 PE=4 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 1.2e-87 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TrEMBL
Match: A0A0A0L1W4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G288610 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38 Identity = 95/176 (53.98%), Postives = 113/176 (64.20%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TrEMBL
Match: A0A125S6K7_CUCME (Lipoxygenase OS=Cucumis melo var. makuwa GN=LOX10 PE=2 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.5e-37 Identity = 94/177 (53.11%), Postives = 112/177 (63.28%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TrEMBL
Match: W9R031_9ROSA (Lipoxygenase OS=Morus notabilis GN=L484_007985 PE=3 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.0e-34 Identity = 90/175 (51.43%), Postives = 111/175 (63.43%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TrEMBL
Match: M5X5W8_PRUPE (Lipoxygenase OS=Prunus persica GN=PRUPE_ppa001634mg PE=3 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 9.8e-34 Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TAIR10
Match: AT3G45140.1 (AT3G45140.1 lipoxygenase 2) HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26 Identity = 72/163 (44.17%), Postives = 93/163 (57.06%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TAIR10
Match: AT1G67560.1 (AT1G67560.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 79.7 bits (195), Expect = 1.8e-15 Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TAIR10
Match: AT1G55020.1 (AT1G55020.1 lipoxygenase 1) HSP 1 Score: 77.8 bits (190), Expect = 6.9e-15 Identity = 57/173 (32.95%), Postives = 75/173 (43.35%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TAIR10
Match: AT1G72520.1 (AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13 Identity = 56/171 (32.75%), Postives = 80/171 (46.78%), Query Frame = 1
BLAST of Csa4G288110.1 vs. TAIR10
Match: AT1G17420.1 (AT1G17420.1 lipoxygenase 3) HSP 1 Score: 67.4 bits (163), Expect = 9.4e-12 Identity = 50/161 (31.06%), Postives = 69/161 (42.86%), Query Frame = 1
BLAST of Csa4G288110.1 vs. NCBI nr
Match: gi|700198982|gb|KGN54140.1| (hypothetical protein Csa_4G288110 [Cucumis sativus]) HSP 1 Score: 330.5 bits (846), Expect = 1.7e-87 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Csa4G288110.1 vs. NCBI nr
Match: gi|449448964|ref|XP_004142235.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 315.5 bits (807), Expect = 5.6e-83 Identity = 155/157 (98.73%), Postives = 156/157 (99.36%), Query Frame = 1
BLAST of Csa4G288110.1 vs. NCBI nr
Match: gi|659098038|ref|XP_008449946.1| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68 Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 1
BLAST of Csa4G288110.1 vs. NCBI nr
Match: gi|700198983|gb|KGN54141.1| (hypothetical protein Csa_4G288610 [Cucumis sativus]) HSP 1 Score: 167.5 bits (423), Expect = 1.9e-38 Identity = 95/176 (53.98%), Postives = 113/176 (64.20%), Query Frame = 1
BLAST of Csa4G288110.1 vs. NCBI nr
Match: gi|778693116|ref|XP_004142135.2| (PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 166.0 bits (419), Expect = 5.5e-38 Identity = 94/177 (53.11%), Postives = 113/177 (63.84%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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