Csa4G287000.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTCCGCTGCTTCCAAAATTAATCTTCAATGTAATGTATCATCCATTGTTTGCTCTCATCAACCACCTGCAGCTGCCATTAATTCATCAGATGTGCCCAGTAGTACTCTCGTTGAACTCCCACCACCAGAGTCCTATAAGAGTGAGTATATAGGTTTATGATATATAAGACACTTTAATTTCAAAGTGCATGCATGTGACAACACTAAATTATATGCCAAAACCTTTGTTGTTTGATTATTATACTTCATTAATTTTCTCTCAGGAGACCAATACAATTGGCTGAGTGATATTGAATTTGCTAGACTCACACTTGCTGGTCTAAACCCTTACTCTATACAGCTAGTCAAGGTATGTGACAATTAACTCACAATCAGTTAATAATATATCTTTATAAATATGAATTAATATCTCTAATTTAATTATTCTCCTGATAATAATTGATCAGAGTTTGCCGTTTATGAGTAAGCTTGACGAGGGAGATTATGGACCTCGAGAATCAAAATTCACTCCCGAACGAGTTCAAGAATTACTTGGATGTTGCATCACAGTTGGAAAGGTGAATTAA ATGCCTTCCGCTGCTTCCAAAATTAATCTTCAATGTAATGTATCATCCATTGTTTGCTCTCATCAACCACCTGCAGCTGCCATTAATTCATCAGATGTGCCCAGTAGTACTCTCGTTGAACTCCCACCACCAGAGTCCTATAAGAGAGACCAATACAATTGGCTGAGTGATATTGAATTTGCTAGACTCACACTTGCTGGTCTAAACCCTTACTCTATACAGCTAGTCAAGAGTTTGCCGTTTATGAGTAAGCTTGACGAGGGAGATTATGGACCTCGAGAATCAAAATTCACTCCCGAACGAGTTCAAGAATTACTTGGATGTTGCATCACAGTTGGAAAGGTGAATTAA ATGCCTTCCGCTGCTTCCAAAATTAATCTTCAATGTAATGTATCATCCATTGTTTGCTCTCATCAACCACCTGCAGCTGCCATTAATTCATCAGATGTGCCCAGTAGTACTCTCGTTGAACTCCCACCACCAGAGTCCTATAAGAGAGACCAATACAATTGGCTGAGTGATATTGAATTTGCTAGACTCACACTTGCTGGTCTAAACCCTTACTCTATACAGCTAGTCAAGAGTTTGCCGTTTATGAGTAAGCTTGACGAGGGAGATTATGGACCTCGAGAATCAAAATTCACTCCCGAACGAGTTCAAGAATTACTTGGATGTTGCATCACAGTTGGAAAGGTGAATTAA MPSAASKINLQCNVSSIVCSHQPPAAAINSSDVPSSTLVELPPPESYKRDQYNWLSDIEFARLTLAGLNPYSIQLVKSLPFMSKLDEGDYGPRESKFTPERVQELLGCCITVGKVN*
BLAST of Csa4G287000.1 vs. Swiss-Prot
Match: LOX21_SOLTU (Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
BLAST of Csa4G287000.1 vs. Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13 Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
BLAST of Csa4G287000.1 vs. Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 9.7e-13 Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 1
BLAST of Csa4G287000.1 vs. Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11 Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 1
BLAST of Csa4G287000.1 vs. Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.1e-11 Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TrEMBL
Match: A0A0A0L0K3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287000 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 5.7e-60 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TrEMBL
Match: A0A0A0KX73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287550 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39 Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TrEMBL
Match: A0A0A0KZ89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287020 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36 Identity = 87/114 (76.32%), Postives = 94/114 (82.46%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TrEMBL
Match: A0A0A0L1V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G287530 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.7e-25 Identity = 65/113 (57.52%), Postives = 81/113 (71.68%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TrEMBL
Match: A0A0A0KX68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G286960 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21 Identity = 57/105 (54.29%), Postives = 76/105 (72.38%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TAIR10
Match: AT3G45140.1 (AT3G45140.1 lipoxygenase 2) HSP 1 Score: 67.0 bits (162), Expect = 8.7e-12 Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TAIR10
Match: AT1G67560.1 (AT1G67560.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 63.5 bits (153), Expect = 9.7e-11 Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TAIR10
Match: AT1G55020.1 (AT1G55020.1 lipoxygenase 1) HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09 Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TAIR10
Match: AT1G17420.1 (AT1G17420.1 lipoxygenase 3) HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09 Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 1
BLAST of Csa4G287000.1 vs. TAIR10
Match: AT1G72520.1 (AT1G72520.1 PLAT/LH2 domain-containing lipoxygenase family protein) HSP 1 Score: 53.5 bits (127), Expect = 1.0e-07 Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1
BLAST of Csa4G287000.1 vs. NCBI nr
Match: gi|700198969|gb|KGN54127.1| (hypothetical protein Csa_4G287000 [Cucumis sativus]) HSP 1 Score: 238.0 bits (606), Expect = 8.1e-60 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
BLAST of Csa4G287000.1 vs. NCBI nr
Match: gi|778693093|ref|XP_004142238.2| (PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
BLAST of Csa4G287000.1 vs. NCBI nr
Match: gi|778693100|ref|XP_011653578.1| (PREDICTED: LOW QUALITY PROTEIN: lipoxygenase 2, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 190.3 bits (482), Expect = 1.9e-45 Identity = 95/113 (84.07%), Postives = 101/113 (89.38%), Query Frame = 1
BLAST of Csa4G287000.1 vs. NCBI nr
Match: gi|659098040|ref|XP_008449947.1| (PREDICTED: lipoxygenase 2, chloroplastic-like, partial [Cucumis melo]) HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44 Identity = 93/113 (82.30%), Postives = 101/113 (89.38%), Query Frame = 1
BLAST of Csa4G287000.1 vs. NCBI nr
Match: gi|700198975|gb|KGN54133.1| (hypothetical protein Csa_4G287550 [Cucumis sativus]) HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39 Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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