Csa4G242860.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAATTGAGCTCTGCAACACAACAAAAGTGGTGAAGAGTGAGATTAGCTGCCAATCCAGATATACCCGTACTTCTTTTTTTCACTCACTACTGTCATTAGTTTATGAGAAATTGCATCGATCTCAAATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATCGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTAATCATAGCAGGCATCGTCATCTTCATCGGCTATGTTACGATCCGCCCTAGGGTACCGTCAATCAGTGTAACCGACGGTCATCTTGAAAGAATCCGAAGCAGTAGAACCGGATTGCTTGAAGTCCAAATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAAAGCACACGCAGGCTTTTCAAAGACGGATTTTGTCCTACTTTTTGACGGAATAGAAATCGCATCACTAGTAGCTCATCGGCCGTTCAAAGTGAACAAAATGAATTACCTGGATTTGCATTTCTTGGTGGAATCATCGGCAATTCCGCTGGATTCAACACAGATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATACAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTTTTGGGACCGCTCAAGTTCTGGTGCCGATTGGATTGTCACCTCAGGTTTTTCCCGCGCAATGGAAGCTATATCCCCACGCCTTGTTCTTCAAAGCAAAAATAATTCCTTAGCACAAAAAGTCTCGAAATTTGAATTTGGAAATTTTCAATGACAAATGAAACTCACCCGTGAGTCGAGATCGGGTTGGTATAAATACGTATAAACGTTTAGAGCAATATTTTATAAAATATAGTTAATTTTCATATTTTATACCTCGATAGAGTATCA ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATCGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTAATCATAGCAGGCATCGTCATCTTCATCGGCTATGTTACGATCCGCCCTAGGGTACCGTCAATCAGTGTAACCGACGGTCATCTTGAAAGAATCCGAAGCAGTAGAACCGGATTGCTTGAAGTCCAAATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAAAGCACACGCAGGCTTTTCAAAGACGGATTTTGTCCTACTTTTTGACGGAATAGAAATCGCATCACTAGTAGCTCATCGGCCGTTCAAAGTGAACAAAATGAATTACCTGGATTTGCATTTCTTGGTGGAATCATCGGCAATTCCGCTGGATTCAACACAGATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATACAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTTTTGGGACCGCTCAAGTTCTGGTGCCGATTGGATTGTCACCTCAGGTTTTTCCCGCGCAATGGAAGCTATATCCCCACGCCTTGTTCTTCAAAGCAAAAATAA ATGCCACCAAATTTCCTATCCAGTCTAAAGCGACATACTCATCCTCTAATTTGGATCGCCGGCATAATCTGCGCCACCATAGCTCTTGCAGTAATCATAGCAGGCATCGTCATCTTCATCGGCTATGTTACGATCCGCCCTAGGGTACCGTCAATCAGTGTAACCGACGGTCATCTTGAAAGAATCCGAAGCAGTAGAACCGGATTGCTTGAAGTCCAAATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAAAGCACACGCAGGCTTTTCAAAGACGGATTTTGTCCTACTTTTTGACGGAATAGAAATCGCATCACTAGTAGCTCATCGGCCGTTCAAAGTGAACAAAATGAATTACCTGGATTTGCATTTCTTGGTGGAATCATCGGCAATTCCGCTGGATTCAACACAGATGCAGCATCTTAGCTGGTCGCTGAAGAGAGATTTGATACAATTCGATCTGAAAGGAAGCTCGAGAACTCGATGGCGAGTTGGAGTTTTGGGACCGCTCAAGTTCTGGTGCCGATTGGATTGTCACCTCAGGTTTTTCCCGCGCAATGGAAGCTATATCCCCACGCCTTGTTCTTCAAAGCAAAAATAA MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLERIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMNYLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDCHLRFFPRNGSYIPTPCSSKQK*
BLAST of Csa4G242860.1 vs. TrEMBL
Match: A0A0A0L1I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G242860 PE=4 SV=1) HSP 1 Score: 408.3 bits (1048), Expect = 5.5e-111 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TrEMBL
Match: V4T9C5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003495mg PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57 Identity = 110/201 (54.73%), Postives = 142/201 (70.65%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TrEMBL
Match: A0A067DL89_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029005mg PE=4 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.6e-57 Identity = 110/201 (54.73%), Postives = 142/201 (70.65%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TrEMBL
Match: M5WBE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014689mg PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 1.7e-56 Identity = 110/197 (55.84%), Postives = 140/197 (71.07%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TrEMBL
Match: A5ATK1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035515 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 7.2e-55 Identity = 108/202 (53.47%), Postives = 144/202 (71.29%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TAIR10
Match: AT5G45320.1 (AT5G45320.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 198.4 bits (503), Expect = 4.3e-51 Identity = 100/192 (52.08%), Postives = 132/192 (68.75%), Query Frame = 1
BLAST of Csa4G242860.1 vs. TAIR10
Match: AT3G26350.1 (AT3G26350.1 LOCATED IN: chloroplast) HSP 1 Score: 68.6 bits (166), Expect = 5.2e-12 Identity = 48/191 (25.13%), Postives = 82/191 (42.93%), Query Frame = 1
BLAST of Csa4G242860.1 vs. NCBI nr
Match: gi|700198828|gb|KGN53986.1| (hypothetical protein Csa_4G242860 [Cucumis sativus]) HSP 1 Score: 408.3 bits (1048), Expect = 7.8e-111 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1
BLAST of Csa4G242860.1 vs. NCBI nr
Match: gi|645265122|ref|XP_008238002.1| (PREDICTED: uncharacterized protein LOC103336689 [Prunus mume]) HSP 1 Score: 230.7 bits (587), Expect = 2.2e-57 Identity = 111/197 (56.35%), Postives = 141/197 (71.57%), Query Frame = 1
BLAST of Csa4G242860.1 vs. NCBI nr
Match: gi|567880675|ref|XP_006432896.1| (hypothetical protein CICLE_v10003495mg [Citrus clementina]) HSP 1 Score: 230.7 bits (587), Expect = 2.2e-57 Identity = 110/201 (54.73%), Postives = 142/201 (70.65%), Query Frame = 1
BLAST of Csa4G242860.1 vs. NCBI nr
Match: gi|595850056|ref|XP_007209845.1| (hypothetical protein PRUPE_ppa014689mg [Prunus persica]) HSP 1 Score: 227.3 bits (578), Expect = 2.5e-56 Identity = 110/197 (55.84%), Postives = 140/197 (71.07%), Query Frame = 1
BLAST of Csa4G242860.1 vs. NCBI nr
Match: gi|1009158815|ref|XP_015897483.1| (PREDICTED: uncharacterized protein LOC107431113 [Ziziphus jujuba]) HSP 1 Score: 223.4 bits (568), Expect = 3.6e-55 Identity = 105/192 (54.69%), Postives = 141/192 (73.44%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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