Csa4G022230.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa4G022230.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2370127 .. 2370684 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATGAATCCCACAATTTTTTTTATAGCATAAATATTAATTTATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCGTAAGTACTCAATTTAAATCCATTTGTTTTTCTCTTCATTCTATTTTGTGTTGATTTGATCCCTAACTCTCGATATGTATATATATATTGAATCCGTTCCTTTTTAATGAATGCAATTTTTCCAATCTAATCGAAATATCTTGTATAGGCTATCATGTTTTAATCCCATCTTGACACTGTGTAGTTATATAATTTTGCACTTTGTGTGTATGTTTATTTATTACGATCTTACTTGAGCCTGATTTACATTGTGTCCTTATATTCTAAAGTTTTTATTTATTCATTTATTCATCTTATTCAGAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

mRNA sequence

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Coding sequence (CDS)

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Protein sequence

MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGPTMKPAAAAAS*
Homology
[Close]
BLAST of Csa4G022230.1 vs. TrEMBL
Match: A0A0A0KZ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022230 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

[Close]
BLAST of Csa4G022230.1 vs. NCBI nr
Match: gi|700197978|gb|KGN53136.1| (hypothetical protein Csa_4G022230 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.9e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

The following BLAST results are available for this feature:
BLAST of Csa4G022230.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ49_CUCSA4.8e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022230 PE=4 SV=1[more]
BLAST of Csa4G022230.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197978|gb|KGN53136.1|6.9e-30100.00hypothetical protein Csa_4G022230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa4G022230Csa4G022230gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa4G022230.1Csa4G022230.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G022230.1.utr5p1Csa4G022230.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa4G022230.1.cds1Csa4G022230.1.cds1CDS
Csa4G022230.1.cds2Csa4G022230.1.cds2CDS