Csa4G022230 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G022230
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2370127 .. 2370684 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACATGAATCCCACAATTTTTTTTATAGCATAAATATTAATTTATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCGTAAGTACTCAATTTAAATCCATTTGTTTTTCTCTTCATTCTATTTTGTGTTGATTTGATCCCTAACTCTCGATATGTATATATATATTGAATCCGTTCCTTTTTAATGAATGCAATTTTTCCAATCTAATCGAAATATCTTGTATAGGCTATCATGTTTTAATCCCATCTTGACACTGTGTAGTTATATAATTTTGCACTTTGTGTGTATGTTTATTTATTACGATCTTACTTGAGCCTGATTTACATTGTGTCCTTATATTCTAAAGTTTTTATTTATTCATTTATTCATCTTATTCAGAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

mRNA sequence

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Coding sequence (CDS)

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Protein sequence

MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGPTMKPAAAAAS*
Homology
[Close]
BLAST of Csa4G022230 vs. TrEMBL
Match: A0A0A0KZ49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022230 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

[Close]
BLAST of Csa4G022230 vs. NCBI nr
Match: gi|700197978|gb|KGN53136.1| (hypothetical protein Csa_4G022230 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 6.9e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

The following BLAST results are available for this feature:
BLAST of Csa4G022230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ49_CUCSA4.8e-30100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022230 PE=4 SV=1[more]
BLAST of Csa4G022230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197978|gb|KGN53136.1|6.9e-30100.00hypothetical protein Csa_4G022230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G022230.1Csa4G022230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G022230CSPI04G03880Wild cucumber (PI 183967)cpicuB182
Csa4G022230CsGy4G003780Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G022230Melon (DHL92) v3.5.1cumeB312
Csa4G022230Watermelon (Charleston Gray)cuwcgB319
Csa4G022230Watermelon (97103) v1cuwmB312
Csa4G022230Cucurbita pepo (Zucchini)cpecuB401
Csa4G022230Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G022230Melon (DHL92) v3.6.1cumedB297
Csa4G022230Watermelon (97103) v2cuwmbB316
Csa4G022230Wax gourdcuwgoB368
Csa4G022230Cucumber (Gy14) v1cgycuB102
Csa4G022230Cucurbita maxima (Rimu)cmacuB332
Csa4G022230Cucurbita maxima (Rimu)cmacuB710
Csa4G022230Cucurbita moschata (Rifu)cmocuB321
Csa4G022230Cucurbita moschata (Rifu)cmocuB700