Csa3G895890.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G895890.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionATR interacting protein
LocationChr3 : 38685260 .. 38690811 (-)
Sequence length1161
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCGCCATACTCTGACAATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGGTTAGTGAATGTGTTTTGTGGCTATTACCATCGCATTTCTTGTGTTAGTTTGTTGTGGCATGGTTTTGTAAGAGAGTTCTTAGAAATTAGAGCTAGGTTTCGAACCGTCTGAGTTGCCTTCTCTTTGTTTGTTGTGTTGCTGCTCGGAATGTCTGCAAAGCTGCGGCGTCTTCTTCTACTAGAAGGAAGGAGATGCAGAGAATGTTGTAAGAGTAAAGGAGATGTACGTGGATTAATTTAACATATCTCCCTGTGTTTGGAGTTTTCTTAGTTAGTCCTCATGCGTGCCAATTTTCTTTTGTCACTTCAATAGAGAATTGTATTTTGATCAGTTTATCCTTTTCGGTTTTGCATTATTTCCTCAATCAAAAACGATAGTTATTGAGGGGAATTATTTGAAATTTTCTCATATTAAGGACATTTCTCTGTGTGATTAGTATTCTCTTTTAAGTTCTTTTGATTGATGCGAACTTTGGACATTTTAACATTTCACGGCCTTGTTTCTGCAAAAGCACATTTGAAATGAATTTTGGTTTTATCTTTTGTTCTTGTGGTGATCATTGATTTCCATTTTAATGTTAGGATTAATAAGCCTTACTTTTAATGTTTGATTGAGGTACTTGTATAATTGTTTGCATAATGGGGGGGAGTTCTCAAAATTTATCGCAAGTTTTGATTGTTTGTGGTGATTGGTGACAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGTATGTTCAATTTTTATTTACTTTTTGTTATTTTGTTCTTGTTTTCGATTGTCATATGCAACTGATGTAGAACATCTTTCTTTAGAGTCTTGATGCTTCTTTAAATGTTTCCTAGGTTTCTTGATTTTAGTTTATGTTTCTTATTCTTTTGTTCTAAAATAACTAACTCATAACAAAGTTATTTTGCAAAATAACTAACTCTTAACCAATTCTTGTTGAGCTTTCAGCCTAGAAAAGGCTTCCCTATTCCTTAATATAAGATATCCTGAAGTATTATCATAAATCTTTCCATGCTTTTCATCCTTCTTTGATGAGCAAGAAAACAATTCTTGATGTTCTTAGCCAGCCGTATGTTACCTTGGCACCTAGACCCCGGATTCTAAAAGGTAGCAAATTAATTCTCTTAAAAGCCCAGGGGCATTTTATGATTTTATGATTTTATCTCATCATTTCAAACAGATCGAGGGAACATTTGCTTTGATCATTCGTAGACTGGTTGCCATCTGCATGATTTTCTTCTGAATAGATTGTTTTCTTTCTTGATTTGGAAACTAATATCATATAGTCTTGATGAAACTCTGTTTATTAAGTATTTTAAGTACCAATTATTCTGTTTGTAACAATGATATGTATTTAAAATTTTATGTTTTATCTAATTAAAAGAACTTGTGAATGCTTTCAGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGTGAGTAAATTTTTCAATTTTGGAAAATGTTACAGTTTTGGGATGCAGTTGGCCTGTAGTCAATATTGTGACAGACAACCAAATGGTTCAAATATCAAAGTTACCAACACTACCATTAAGTGTAGAATGATTGTCAATAAGCTCCTCCCTCCTTTGTAAAATATCATGAAACTTGGTTTCATAAATCTACTTGTATAAATGAAGCATCACACCTTCATCTTATCTTGGGTACTGTATAGATGATTCAACTATATATGAGGTGGCTACGATACATTAATATACATGTTTCTTTTCCCTCTAATTATATTATAAAATGCTTGTGTTAGTCTTGCTTGGCTAACCCTCGGCCTTAGTCCACCGTTTCTTGCTGTTCATTGAAACCTGGAATGAATTATTGTTTCTTAAGTGCATTTATCTTCTGAAGTTTATAAGCTATTTCTTATATTACATTATCAATAAAATCAGGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGGTAGTTATAAGGATGAGCTAAATATCATTGTCTCTTATATTTTATGGTGCATACTAACTAAAATTTTCCATATTTCGCTGTTTTTTCATCTACAAGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTATCTTACAGAACGTTTCACTATTTTGTAACTCCATAGAATGTTATAGTGGCTGACATAAAGAAGATCCGAACTTTTTCTTTATTAAATATGGTATGATCTTTTTGCCACCAAGCTGTTATAGGAAAGTTATTGGGATGTAATTGAACTATTAAGGTCATATTAGCAATTAGTTAAGGAGTTTGTTATGAAAGTTTAGTTATAAATACAATGAGTAGGGAAGGAGGAAGGTAGACAATATTTGGTGAAATACAATAGGGCTTGAGAGTATTCTCAAGAATGGGAGGGTTCAAGTACCACAAACACTTTATCTTATAATTCCATTATCTTTTATAGTTTAATATATTCGAGTTCTAAGTTCTATACAAATTTTTTTATTGTTATCCAGAATAGGATAGTTATCATGTTACTGAGGGTAATATGCCCTTAGTAGGTATTATTGTTTCCAAGCTTTCAATGTGGTGCCATGAGGACTGGGAGGTCTGGCAGAACAATTTTATTTTGTAGTACAATACAAAGAGTTTCTATGATCCTAAAATGACAGATAAATATTTTGTACATGAAGGGATAACTTTGATGTTTTTGGACTATTAAATTCATAATTACCATTACACATTGCATAAATTTCAACTTCACTTTTGAAAACCAAATTTAATAATATCTGAATTTTTAGGACTATGATAATTAGTACGTGGACAATTGTGAAAGTGTCTCCAAAAAGTTGTGACATGTTCAGCCAATTTGCTAGCTTTGACATACAGAGGCTGAGTTCATGTCAAAGAATGCGTTTTAGGGTGCTTCAGTTGTGTAGGGCACAGGCTTAGAGGAAATTGGAACTACTATTTAAAAACCCTGGAGACGTGGAAGTGCCCATGCGGCTTTTTTTCTCATTTTTCTAATGGACTAGTTTTTTTGCTATAATTCTCTTTAAGCAATTCCTTTCTTAACCTGATGTTATATTTGTTAATTTGTCTTTAAGTAGTCATGTTCCTGTTATTTTAATAAGTTTCTATAATTATTTTCCACCTGTTTTTTTCTGGTTGTAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTGAGTAAGACTTGAAGGTTTTCTGGTTACACAAAAGAATTAAACTAAGTTTAAAGATTTGTGTACTTTTGAATCTGCATTAGGACTAAGATTAAGAAGTGAGGCAATATTATAGAACTAAAGAAAAGATTTGGACAAAATATATGTAACAAAGGCACGTTTTCCTTCAAAAGCACATCTTCTTTTTATTATTTTCAGCTGAAATAATGCAAGAAACTTAATTTATAATTGAGCAAGTTCAGTCTGCATTAGTAACTTCTGTATCCATAGCACATTTGGGATTATTTCTTATTAGTCCAGGGAAGATAATTGATGATGATGGTCAGTAAGATTGTAGCCTATACAAGGTTGGAATCAGAAGATCTTGTGGTTTCCATGTTCATGCATTGTTAATCACGTTTCTGGAGTTGGGTGTTTATTTTCACATTTAGTCAATACAATTGAATTTGAATGATGTTCTGCATTTCACATCTTCTGAGTTTGTAAGGCATCTATTCATTAAAAGAAAAAATTGAAGTTTATCTGGCATCGATATTTCTTGAGGTGGAAGCTCAGTTGTCCATTGGAAAAAAACACAATTTTCTTGCTGCATTTTTCCTTCCCTGTTTAAAATATGAGTTCCTTTATTTTTGGATGCAGGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGGTATATTACACTCTACTTTGAAACAAATGTAAATTTAACCTCCCTAGAAGCATGTGATTAACGTGGGAGAAGAAATTTTCCAGCTCTATTCAAATTTATGGCCAATTAGAACTTAATATTGTGACTTTATTCTACGACTAACAAGGTTCCTTGCTGATTGATTATTTAGAAAAGAAGTGAACATAAATTTATGAAGTAGTCCATATCCCATAGTTTTTAAGTTTTTTTTTTTTTTTTTTTTTCCGAATGAGCAACAATTTAATTGATTGATGAAATAGAGGAAAACTCCAAACACGTCCAGGTGAATCACGAAAAAACTCTTCAATTGGAGATTTGTTGATTAAATAATATGAGCTATATAATAAGCGAAAGGGTCCAAACTCCATAGATGTTAGTCAAGTAATTTATTTCTATGCATGTCATTTTTTAGCTGAGATGGAAGTTTCTGAACTTAAAATTAATATATAATCCTTGCACTTTTTAACTTCATGTTAGTTCTTTAGCATTTAGTTGGTGGTATAAAGAAGTGAAGTCTATTATGACTCATATATATTCTGTTTGTGGCATCTATTAACGTGTAATTGGATGTCTATATATGGTTTTATTACTTACAATTGTTGATCTTCTGGTTTCCTTATCATTTTGGATCAAATCCTTCTTGAGTGATGCTGTATTGTTCCTTGGTCAAGAACTTCCATGTCTTCGTTTGGTTCTTATTCTTATGAACTCTGATTTGATCTTTCCAGTGCAATCTGCTCAGGGAAACAGTCATGA

mRNA sequence

ATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGTGCAATCTGCTCAGGGAAACAGTCATGA

Coding sequence (CDS)

ATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGTGCAATCTGCTCAGGGAAACAGTCATGA

Protein sequence

MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFDAAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSESTDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFDKLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSDVALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHILHMFLKRLLWLERKSERSAICSGKQS*
Homology
[Close]
BLAST of Csa3G895890.1 vs. TAIR10
Match: AT5G45610.1 (AT5G45610.1 protein dimerizations)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 115/379 (30.34%), Postives = 170/379 (44.85%), Query Frame = 1 

Query: 10  DWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVE 69
           D E++ +FL  +  +E     +    P+P P    T LP PPP  +         Q    
Sbjct: 5   DEEFNDEFLLAIDSIETTLKKADMYRPLP-PPYLPTFLPAPPPSTKISSSLSHPMQLQSS 64

Query: 70  PLHVRP--------ISYSPPRELSQ-IATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 129
               R         +SYSPPRELSQ + +G     + + N          +      R D
Sbjct: 65  AGQQRKQIQVPDPFLSYSPPRELSQRVVSGFNDALMDYSNSTVVTAAKPISPTTSNRRCD 124

Query: 130 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 189
           + K+LEI  LK+EL RVSKQL D+EQEC +L+K ++K+ E   + + +   Q      S+
Sbjct: 125 SEKDLEIDRLKKELERVSKQLLDVEQECSQLKKGKSKETESRNLCADDNRGQCSTVHASK 184

Query: 190 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERG-NDDLPVF 249
             DL               D++       +V  R  D+        S    G   D+   
Sbjct: 185 RIDL-------------EPDVA-----TSSVNHRENDSRMALDDKRSFKTTGVQADVANH 244

Query: 250 DKLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSS 309
             LSKKL   W   +     ++L+SELLL+C TDL +LF  + +   P+         SS
Sbjct: 245 SDLSKKLLDIWRTSNYQDPRKNLISELLLACSTDLQILFSFMKISTPPQELNKQEAKTSS 304

Query: 310 DVALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLH 369
           D       Q  +  E++KV  LY+ +TK+S G V ++ L  PLLDLC  +   +VHRSL 
Sbjct: 305 D------RQSSKALESEKVYQLYSAVTKISYGFVNLKTLVEPLLDLCKAETAVLVHRSLR 358

Query: 370 ILHMFLKRLLWLERKSERS 379
           +LH+ L+ +   E++ E S
Sbjct: 365 VLHVLLEHICGDEKRFEAS 358

[Close]
BLAST of Csa3G895890.1 vs. TAIR10
Match: AT2G24060.1 (AT2G24060.1 Translation initiation factor 3 protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 22/42 (52.38%), Postives = 24/42 (57.14%), Query Frame = 1 

Query: 32  TANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVEPLHV 74
           TA N      +  T+ P P PEPEPEPEPEPEP+   EPL +
Sbjct: 269 TAENEASASAAEITAEPEPEPEPEPEPEPEPEPEPEPEPLQI 310

[Close]
BLAST of Csa3G895890.1 vs. NCBI nr
Match: gi|449437242|ref|XP_004136401.1| (PREDICTED: uncharacterized protein LOC101220265 [Cucumis sativus])

HSP 1 Score: 759.2 bits (1959), Expect = 3.5e-216
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1 

Query: 1   MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP 60
           MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP
Sbjct: 1   MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP 60

Query: 61  EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 120
           EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD
Sbjct: 61  EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 120

Query: 121 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 180
           AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE
Sbjct: 121 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 180

Query: 181 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD 240
           STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD
Sbjct: 181 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD 240

Query: 241 KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD 300
           KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD
Sbjct: 241 KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD 300

Query: 301 VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI 360
           VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI
Sbjct: 301 VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI 360

Query: 361 LHMFLKRLLWLERKSER 378
           LHMFLKRLLWLERKSER
Sbjct: 361 LHMFLKRLLWLERKSER 377

The following BLAST results are available for this feature:
BLAST of Csa3G895890.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45610.11.4e-3430.34 protein dimerizations[more]
AT2G24060.16.2e-0652.38 Translation initiation factor 3 protein[more]
BLAST of Csa3G895890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437242|ref|XP_004136401.1|3.5e-216100.00PREDICTED: uncharacterized protein LOC101220265 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G895890Csa3G895890gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G895890.1Csa3G895890.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G895890.1.cds8Csa3G895890.1.cds8CDS
Csa3G895890.1.cds7Csa3G895890.1.cds7CDS
Csa3G895890.1.cds6Csa3G895890.1.cds6CDS
Csa3G895890.1.cds5Csa3G895890.1.cds5CDS
Csa3G895890.1.cds4Csa3G895890.1.cds4CDS
Csa3G895890.1.cds3Csa3G895890.1.cds3CDS
Csa3G895890.1.cds2Csa3G895890.1.cds2CDS
Csa3G895890.1.cds1Csa3G895890.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G895890.1.utr5p1Csa3G895890.1.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 134..161
scor