Csa3G895890 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G895890
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATR interacting protein
Location	Chr3 : 38685260 .. 38690811 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGCCATACTCTGACAATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGGTTAGTGAATGTGTTTTGTGGCTATTACCATCGCATTTCTTGTGTTAGTTTGTTGTGGCATGGTTTTGTAAGAGAGTTCTTAGAAATTAGAGCTAGGTTTCGAACCGTCTGAGTTGCCTTCTCTTTGTTTGTTGTGTTGCTGCTCGGAATGTCTGCAAAGCTGCGGCGTCTTCTTCTACTAGAAGGAAGGAGATGCAGAGAATGTTGTAAGAGTAAAGGAGATGTACGTGGATTAATTTAACATATCTCCCTGTGTTTGGAGTTTTCTTAGTTAGTCCTCATGCGTGCCAATTTTCTTTTGTCACTTCAATAGAGAATTGTATTTTGATCAGTTTATCCTTTTCGGTTTTGCATTATTTCCTCAATCAAAAACGATAGTTATTGAGGGGAATTATTTGAAATTTTCTCATATTAAGGACATTTCTCTGTGTGATTAGTATTCTCTTTTAAGTTCTTTTGATTGATGCGAACTTTGGACATTTTAACATTTCACGGCCTTGTTTCTGCAAAAGCACATTTGAAATGAATTTTGGTTTTATCTTTTGTTCTTGTGGTGATCATTGATTTCCATTTTAATGTTAGGATTAATAAGCCTTACTTTTAATGTTTGATTGAGGTACTTGTATAATTGTTTGCATAATGGGGGGGAGTTCTCAAAATTTATCGCAAGTTTTGATTGTTTGTGGTGATTGGTGACAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGTATGTTCAATTTTTATTTACTTTTTGTTATTTTGTTCTTGTTTTCGATTGTCATATGCAACTGATGTAGAACATCTTTCTTTAGAGTCTTGATGCTTCTTTAAATGTTTCCTAGGTTTCTTGATTTTAGTTTATGTTTCTTATTCTTTTGTTCTAAAATAACTAACTCATAACAAAGTTATTTTGCAAAATAACTAACTCTTAACCAATTCTTGTTGAGCTTTCAGCCTAGAAAAGGCTTCCCTATTCCTTAATATAAGATATCCTGAAGTATTATCATAAATCTTTCCATGCTTTTCATCCTTCTTTGATGAGCAAGAAAACAATTCTTGATGTTCTTAGCCAGCCGTATGTTACCTTGGCACCTAGACCCCGGATTCTAAAAGGTAGCAAATTAATTCTCTTAAAAGCCCAGGGGCATTTTATGATTTTATGATTTTATCTCATCATTTCAAACAGATCGAGGGAACATTTGCTTTGATCATTCGTAGACTGGTTGCCATCTGCATGATTTTCTTCTGAATAGATTGTTTTCTTTCTTGATTTGGAAACTAATATCATATAGTCTTGATGAAACTCTGTTTATTAAGTATTTTAAGTACCAATTATTCTGTTTGTAACAATGATATGTATTTAAAATTTTATGTTTTATCTAATTAAAAGAACTTGTGAATGCTTTCAGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGTGAGTAAATTTTTCAATTTTGGAAAATGTTACAGTTTTGGGATGCAGTTGGCCTGTAGTCAATATTGTGACAGACAACCAAATGGTTCAAATATCAAAGTTACCAACACTACCATTAAGTGTAGAATGATTGTCAATAAGCTCCTCCCTCCTTTGTAAAATATCATGAAACTTGGTTTCATAAATCTACTTGTATAAATGAAGCATCACACCTTCATCTTATCTTGGGTACTGTATAGATGATTCAACTATATATGAGGTGGCTACGATACATTAATATACATGTTTCTTTTCCCTCTAATTATATTATAAAATGCTTGTGTTAGTCTTGCTTGGCTAACCCTCGGCCTTAGTCCACCGTTTCTTGCTGTTCATTGAAACCTGGAATGAATTATTGTTTCTTAAGTGCATTTATCTTCTGAAGTTTATAAGCTATTTCTTATATTACATTATCAATAAAATCAGGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGGTAGTTATAAGGATGAGCTAAATATCATTGTCTCTTATATTTTATGGTGCATACTAACTAAAATTTTCCATATTTCGCTGTTTTTTCATCTACAAGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTATCTTACAGAACGTTTCACTATTTTGTAACTCCATAGAATGTTATAGTGGCTGACATAAAGAAGATCCGAACTTTTTCTTTATTAAATATGGTATGATCTTTTTGCCACCAAGCTGTTATAGGAAAGTTATTGGGATGTAATTGAACTATTAAGGTCATATTAGCAATTAGTTAAGGAGTTTGTTATGAAAGTTTAGTTATAAATACAATGAGTAGGGAAGGAGGAAGGTAGACAATATTTGGTGAAATACAATAGGGCTTGAGAGTATTCTCAAGAATGGGAGGGTTCAAGTACCACAAACACTTTATCTTATAATTCCATTATCTTTTATAGTTTAATATATTCGAGTTCTAAGTTCTATACAAATTTTTTTATTGTTATCCAGAATAGGATAGTTATCATGTTACTGAGGGTAATATGCCCTTAGTAGGTATTATTGTTTCCAAGCTTTCAATGTGGTGCCATGAGGACTGGGAGGTCTGGCAGAACAATTTTATTTTGTAGTACAATACAAAGAGTTTCTATGATCCTAAAATGACAGATAAATATTTTGTACATGAAGGGATAACTTTGATGTTTTTGGACTATTAAATTCATAATTACCATTACACATTGCATAAATTTCAACTTCACTTTTGAAAACCAAATTTAATAATATCTGAATTTTTAGGACTATGATAATTAGTACGTGGACAATTGTGAAAGTGTCTCCAAAAAGTTGTGACATGTTCAGCCAATTTGCTAGCTTTGACATACAGAGGCTGAGTTCATGTCAAAGAATGCGTTTTAGGGTGCTTCAGTTGTGTAGGGCACAGGCTTAGAGGAAATTGGAACTACTATTTAAAAACCCTGGAGACGTGGAAGTGCCCATGCGGCTTTTTTTCTCATTTTTCTAATGGACTAGTTTTTTTGCTATAATTCTCTTTAAGCAATTCCTTTCTTAACCTGATGTTATATTTGTTAATTTGTCTTTAAGTAGTCATGTTCCTGTTATTTTAATAAGTTTCTATAATTATTTTCCACCTGTTTTTTTCTGGTTGTAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTGAGTAAGACTTGAAGGTTTTCTGGTTACACAAAAGAATTAAACTAAGTTTAAAGATTTGTGTACTTTTGAATCTGCATTAGGACTAAGATTAAGAAGTGAGGCAATATTATAGAACTAAAGAAAAGATTTGGACAAAATATATGTAACAAAGGCACGTTTTCCTTCAAAAGCACATCTTCTTTTTATTATTTTCAGCTGAAATAATGCAAGAAACTTAATTTATAATTGAGCAAGTTCAGTCTGCATTAGTAACTTCTGTATCCATAGCACATTTGGGATTATTTCTTATTAGTCCAGGGAAGATAATTGATGATGATGGTCAGTAAGATTGTAGCCTATACAAGGTTGGAATCAGAAGATCTTGTGGTTTCCATGTTCATGCATTGTTAATCACGTTTCTGGAGTTGGGTGTTTATTTTCACATTTAGTCAATACAATTGAATTTGAATGATGTTCTGCATTTCACATCTTCTGAGTTTGTAAGGCATCTATTCATTAAAAGAAAAAATTGAAGTTTATCTGGCATCGATATTTCTTGAGGTGGAAGCTCAGTTGTCCATTGGAAAAAAACACAATTTTCTTGCTGCATTTTTCCTTCCCTGTTTAAAATATGAGTTCCTTTATTTTTGGATGCAGGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGGTATATTACACTCTACTTTGAAACAAATGTAAATTTAACCTCCCTAGAAGCATGTGATTAACGTGGGAGAAGAAATTTTCCAGCTCTATTCAAATTTATGGCCAATTAGAACTTAATATTGTGACTTTATTCTACGACTAACAAGGTTCCTTGCTGATTGATTATTTAGAAAAGAAGTGAACATAAATTTATGAAGTAGTCCATATCCCATAGTTTTTAAGTTTTTTTTTTTTTTTTTTTTTCCGAATGAGCAACAATTTAATTGATTGATGAAATAGAGGAAAACTCCAAACACGTCCAGGTGAATCACGAAAAAACTCTTCAATTGGAGATTTGTTGATTAAATAATATGAGCTATATAATAAGCGAAAGGGTCCAAACTCCATAGATGTTAGTCAAGTAATTTATTTCTATGCATGTCATTTTTTAGCTGAGATGGAAGTTTCTGAACTTAAAATTAATATATAATCCTTGCACTTTTTAACTTCATGTTAGTTCTTTAGCATTTAGTTGGTGGTATAAAGAAGTGAAGTCTATTATGACTCATATATATTCTGTTTGTGGCATCTATTAACGTGTAATTGGATGTCTATATATGGTTTTATTACTTACAATTGTTGATCTTCTGGTTTCCTTATCATTTTGGATCAAATCCTTCTTGAGTGATGCTGTATTGTTCCTTGGTCAAGAACTTCCATGTCTTCGTTTGGTTCTTATTCTTATGAACTCTGATTTGATCTTTCCAGTGCAATCTGCTCAGGGAAACAGTCATGA

mRNA sequence

ATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGTGCAATCTGCTCAGGGAAACAGTCATGA

Coding sequence (CDS)

ATGCGGACCGAAGACGAAGGGTTCGAAGATTGGGAGTGGGACGCTGATTTCTTAGACCAACTCATCCAAGTCGAAGAGCTTGCTATTTCCTCCACCGCCAACAATCCCGTTCCGATTCCGACTTCTTCTTCCACCTCCTTACCTCTGCCACCGCCTGAACCAGAACCGGAACCGGAACCGGAACCAGAACCGCAGCATTTGGTGGAACCGTTGCATGTCCGTCCTATTAGTTATTCGCCTCCTCGAGAACTCTCTCAGATAGCCACTGGTTTACGTTCTCACGACATTCGCTTTCCTAATGGCTTGAGCGAATGTGGTCCTTCTTCCTCCGCGCTTGCTCCGTGCTTGCATCGCTTCGATGCTGCAAAAGAACTTGAAATTTGTGATTTGAAGAGGGAGCTAGGGCGCGTCTCAAAGCAGCTTAAGGACTTGGAACAAGAGTGTGTTGAACTCAGGAAGAACAGAAACAAAAAGGAGGAGCGGCTTAGAGTTGTCTCTTCCAACAAGGATGAGCAATATATTGGCCATCGTCTTTCAGAAAGTACAGATTTGAGAGTGGCAGGGAAAGATGGTGTACGTACTGGCATGAAGAGTGAAGATATTTCTGGTGACCTTGGTGGCCCTCACGCTGTTACTTCTAGGAGTAAAGACAATGAACAGGGAGAAAAAGCCCACAGTTCTGTTGGAGAGAGAGGCAATGACGATTTACCTGTTTTTGACAAACTCTCAAAGAAGTTGCAAGTCTTCTGGATCCCTGAAAGTGACTATAAGATAGGACAAAGTTTGGTTTCAGAATTACTTTTGTCATGTGAAACAGATCTTCATGTGCTTTTTCACAGCATTGGCATGGAGTTATCCCCTAAGTTTTCCACGGCCTTGGCTGGTGATAACTCTTCTGATGTGGCTTTAAAACCACCTTTGCAGCTTCTTCAGTGTCCAGAAGCTAAAAAAGTATCTAACCTCTACACCACCTTGACTAAGGTAAGTAATGGAATAGTCAAGATGGAGGCATTGTTTAGTCCGTTGCTTGATCTCTGTAATCTTGACAATGTTGCAGTGGTTCATAGATCTCTGCATATATTGCATATGTTTCTGAAACGCCTGTTATGGTTGGAGAGGAAATCGGAAAGAAGTGCAATCTGCTCAGGGAAACAGTCATGA

Protein sequence

MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFDAAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSESTDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFDKLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSDVALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHILHMFLKRLLWLERKSERSAICSGKQS*

Homology

[Close]

BLAST of Csa3G895890 vs. TAIR10
Match: AT5G45610.1 (AT5G45610.1 protein dimerizations)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 115/379 (30.34%), Postives = 170/379 (44.85%), Query Frame = 1


Query: 10  DWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVE 69
           D E++ +FL  +  +E     +    P+P P    T LP PPP  +         Q    
Sbjct: 5   DEEFNDEFLLAIDSIETTLKKADMYRPLP-PPYLPTFLPAPPPSTKISSSLSHPMQLQSS 64

Query: 70  PLHVRP--------ISYSPPRELSQ-IATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 129
               R         +SYSPPRELSQ + +G     + + N          +      R D
Sbjct: 65  AGQQRKQIQVPDPFLSYSPPRELSQRVVSGFNDALMDYSNSTVVTAAKPISPTTSNRRCD 124

Query: 130 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 189
           + K+LEI  LK+EL RVSKQL D+EQEC +L+K ++K+ E   + + +   Q      S+
Sbjct: 125 SEKDLEIDRLKKELERVSKQLLDVEQECSQLKKGKSKETESRNLCADDNRGQCSTVHASK 184

Query: 190 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERG-NDDLPVF 249
             DL               D++       +V  R  D+        S    G   D+   
Sbjct: 185 RIDL-------------EPDVA-----TSSVNHRENDSRMALDDKRSFKTTGVQADVANH 244

Query: 250 DKLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSS 309
             LSKKL   W   +     ++L+SELLL+C TDL +LF  + +   P+         SS
Sbjct: 245 SDLSKKLLDIWRTSNYQDPRKNLISELLLACSTDLQILFSFMKISTPPQELNKQEAKTSS 304

Query: 310 DVALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLH 369
           D       Q  +  E++KV  LY+ +TK+S G V ++ L  PLLDLC  +   +VHRSL 
Sbjct: 305 D------RQSSKALESEKVYQLYSAVTKISYGFVNLKTLVEPLLDLCKAETAVLVHRSLR 358

Query: 370 ILHMFLKRLLWLERKSERS 379
           +LH+ L+ +   E++ E S
Sbjct: 365 VLHVLLEHICGDEKRFEAS 358

[Close]

BLAST of Csa3G895890 vs. TAIR10
Match: AT2G24060.1 (AT2G24060.1 Translation initiation factor 3 protein)

HSP 1 Score: 49.3 bits (116), Expect = 6.2e-06
Identity = 22/42 (52.38%), Postives = 24/42 (57.14%), Query Frame = 1


Query: 32  TANNPVPIPTSSSTSLPLPPPEPEPEPEPEPEPQHLVEPLHV 74
           TA N      +  T+ P P PEPEPEPEPEPEP+   EPL +
Sbjct: 269 TAENEASASAAEITAEPEPEPEPEPEPEPEPEPEPEPEPLQI 310

[Close]

BLAST of Csa3G895890 vs. NCBI nr
Match: gi|449437242|ref|XP_004136401.1| (PREDICTED: uncharacterized protein LOC101220265 [Cucumis sativus])

HSP 1 Score: 759.2 bits (1959), Expect = 3.5e-216
Identity = 377/377 (100.00%), Postives = 377/377 (100.00%), Query Frame = 1


Query: 1   MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP 60
           MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP
Sbjct: 1   MRTEDEGFEDWEWDADFLDQLIQVEELAISSTANNPVPIPTSSSTSLPLPPPEPEPEPEP 60

Query: 61  EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 120
           EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD
Sbjct: 61  EPEPQHLVEPLHVRPISYSPPRELSQIATGLRSHDIRFPNGLSECGPSSSALAPCLHRFD 120

Query: 121 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 180
           AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE
Sbjct: 121 AAKELEICDLKRELGRVSKQLKDLEQECVELRKNRNKKEERLRVVSSNKDEQYIGHRLSE 180

Query: 181 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD 240
           STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD
Sbjct: 181 STDLRVAGKDGVRTGMKSEDISGDLGGPHAVTSRSKDNEQGEKAHSSVGERGNDDLPVFD 240

Query: 241 KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD 300
           KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD
Sbjct: 241 KLSKKLQVFWIPESDYKIGQSLVSELLLSCETDLHVLFHSIGMELSPKFSTALAGDNSSD 300

Query: 301 VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI 360
           VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI
Sbjct: 301 VALKPPLQLLQCPEAKKVSNLYTTLTKVSNGIVKMEALFSPLLDLCNLDNVAVVHRSLHI 360

Query: 361 LHMFLKRLLWLERKSER 378
           LHMFLKRLLWLERKSER
Sbjct: 361 LHMFLKRLLWLERKSER 377

The following BLAST results are available for this feature:

BLAST of Csa3G895890 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45610.1	1.4e-34	30.34	protein dimerizations	[more]
AT2G24060.1	6.2e-06	52.38	Translation initiation factor 3 protein	[more]

BLAST of Csa3G895890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437242\|ref\|XP_004136401.1\|	3.5e-216	100.00	PREDICTED: uncharacterized protein LOC101220265 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G895890.1	Csa3G895890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 134..161 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G895890	CmoCh19G002250	Cucurbita moschata (Rifu)	cmocuB501

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G895890	Cucurbita pepo (Zucchini)	cpecuB239
Csa3G895890	Bottle gourd (USVL1VR-Ls)	culsiB147
Csa3G895890	Cucumber (Gy14) v2	cgybcuB110
Csa3G895890	Melon (DHL92) v3.6.1	cumedB208
Csa3G895890	Silver-seed gourd	carcuB0087
Csa3G895890	Watermelon (97103) v2	cuwmbB252
Csa3G895890	Wax gourd	cuwgoB301
Csa3G895890	Cucumber (Gy14) v1	cgycuB450
Csa3G895890	Cucurbita maxima (Rimu)	cmacuB510
Csa3G895890	Melon (DHL92) v3.5.1	cumeB222
Csa3G895890	Watermelon (Charleston Gray)	cuwcgB175
Csa3G895890	Watermelon (97103) v1	cuwmB180