Csa3G890000.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G890000.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 37940452 .. 37940949 (+)
Sequence length348
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTGGCACTAGCTAGGTTGTTTGTTATTCTGCTGGAGCCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTACTAATCTTATTAATTCCATGAAGTATAAGTCTTTGATTTTAACAGAGTCGTTGGGTTTTGTTGATGGTATGTGTGATTTCTTTTGCTTGTTGTGCACGCTCTGCGAATAAGGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

mRNA sequence

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Coding sequence (CDS)

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Protein sequence

MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALARIRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI*
Homology
[Close]
BLAST of Csa3G890000.1 vs. TrEMBL
Match: A0A0A0LGW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 116
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

[Close]
BLAST of Csa3G890000.1 vs. NCBI nr
Match: gi|700205111|gb|KGN60244.1| (hypothetical protein Csa_3G890000 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 116
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

The following BLAST results are available for this feature:
BLAST of Csa3G890000.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW5_CUCSA3.5e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890000 PE=4 SV=1[more]
BLAST of Csa3G890000.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205111|gb|KGN60244.1|5.0e-62100.00hypothetical protein Csa_3G890000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G890000Csa3G890000gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G890000.1Csa3G890000.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G890000.1.cds1Csa3G890000.1.cds1CDS
Csa3G890000.1.cds2Csa3G890000.1.cds2CDS
Csa3G890000.1.cds3Csa3G890000.1.cds3CDS