Csa3G890000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G890000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 37940452 .. 37940949 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTGGCACTAGCTAGGTTGTTTGTTATTCTGCTGGAGCCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTACTAATCTTATTAATTCCATGAAGTATAAGTCTTTGATTTTAACAGAGTCGTTGGGTTTTGTTGATGGTATGTGTGATTTCTTTTGCTTGTTGTGCACGCTCTGCGAATAAGGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

mRNA sequence

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Coding sequence (CDS)

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Protein sequence

MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALARIRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI*
Homology
[Close]
BLAST of Csa3G890000 vs. TrEMBL
Match: A0A0A0LGW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 116
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

[Close]
BLAST of Csa3G890000 vs. NCBI nr
Match: gi|700205111|gb|KGN60244.1| (hypothetical protein Csa_3G890000 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-62
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 116
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

The following BLAST results are available for this feature:
BLAST of Csa3G890000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW5_CUCSA3.5e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G890000 PE=4 SV=1[more]
BLAST of Csa3G890000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205111|gb|KGN60244.1|5.0e-62100.00hypothetical protein Csa_3G890000 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G890000.1Csa3G890000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G890000MELO3C003540Melon (DHL92) v3.5.1cumeB222
Csa3G890000MELO3C003540.2Melon (DHL92) v3.6.1cumedB208
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G890000Cucurbita maxima (Rimu)cmacuB014
Csa3G890000Cucurbita maxima (Rimu)cmacuB180
Csa3G890000Cucurbita maxima (Rimu)cmacuB445
Csa3G890000Cucurbita maxima (Rimu)cmacuB796
Csa3G890000Cucurbita moschata (Rifu)cmocuB005
Csa3G890000Cucurbita moschata (Rifu)cmocuB164
Csa3G890000Cucurbita moschata (Rifu)cmocuB432
Csa3G890000Cucurbita moschata (Rifu)cmocuB789
Csa3G890000Melon (DHL92) v3.5.1cumeB263
Csa3G890000Watermelon (Charleston Gray)cuwcgB199
Csa3G890000Watermelon (Charleston Gray)cuwcgB210
Csa3G890000Watermelon (97103) v1cuwmB264
Csa3G890000Watermelon (97103) v1cuwmB271
Csa3G890000Cucurbita pepo (Zucchini)cpecuB111
Csa3G890000Cucurbita pepo (Zucchini)cpecuB557
Csa3G890000Cucurbita pepo (Zucchini)cpecuB776
Csa3G890000Cucurbita pepo (Zucchini)cpecuB827
Csa3G890000Bottle gourd (USVL1VR-Ls)culsiB166
Csa3G890000Bottle gourd (USVL1VR-Ls)culsiB191
Csa3G890000Cucumber (Gy14) v2cgybcuB110
Csa3G890000Cucumber (Gy14) v2cgybcuB265
Csa3G890000Melon (DHL92) v3.6.1cumedB253
Csa3G890000Silver-seed gourdcarcuB0061
Csa3G890000Silver-seed gourdcarcuB0437
Csa3G890000Silver-seed gourdcarcuB0605
Csa3G890000Silver-seed gourdcarcuB0655
Csa3G890000Watermelon (97103) v2cuwmbB180
Csa3G890000Watermelon (97103) v2cuwmbB191
Csa3G890000Wax gourdcuwgoB340
Csa3G890000Cucumber (Chinese Long) v2cucuB122
Csa3G890000Cucumber (Gy14) v1cgycuB119
Csa3G890000Cucumber (Gy14) v1cgycuB450