Csa3G730870.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G730870.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 27384898 .. 27386453 (+)
Sequence length600
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGGTATCATCTCTCAATTTTCCTCTGATCAAGATCTGAGCAAAACCTTAGCCAATTCAAACAATAAAATTATTTTGAACAAACAAGTAAATCGAGCTTCGAATACACCGATAGTATTCTGAAAATTAACTTCTGGCAAGAGAATAAAATAAAATCAACCCCTCTTTTGTTGACTGACTTGTAAAAGAACAGTCAGAGCTTTAAAAGTGTTTGTTTTCCTTTTCACTGTTTCCTTTTTCTACTGACATTAATGTTGCGGGGCCAGGGAAAAGAAAACACAGTGTTCCTCATTTTTTCCATTAACAAGGTTGGTGACAAAAATGGCGTTAAGTATTTTTCCCCATCTACTACTGATTATGACTGCATTTATCATACTTTTCTGTTGAATAAAAAGACTTAACGAAGCAAAAGGCATGTGATTGCTCTACCAACTGAGAAGAAAATATCAGAAGGTTCCAAAATAGCTAAGATACGCTGCAAAGATTTTGCCTCACATTTCACCCACTTTAAAGCAAGAAAGAAAGTGACAACATCCTAACCCTCGCGCCAGAGTTTAATTTAATTTCATGATATTTGGATTTAACCTAACTGTTTGAGTTGTGAATTTAAATAGTTTATTGTTTAAGCTAGGAAGCAAACCTCAAAGAAAATTGAACTCTGAGTTCTATTTCCATGAACTGAAACTCTTTAATCAAAACTCTGTTATCAAAAAAATCAATTCAACTTCAGAGACAGAATAATCGTAAAATACTCACTTTCTCATTTGCTCGTCGAGTGATCGGTCAGTGTATGTCGCAATTAGTGGCATTACTCCGTTACTGCAACCTACATTCATAGAGACGATGACATCCAAAGGCAGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGGTTAGAAGATGATATTGTATAATTGATGAAGAATAGTACTCGTAATCTTGATGAAGAGTATGGGAGGACACTGTTTAGCCTGTGAATGGTCGGAATGTAGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

mRNA sequence

ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

Coding sequence (CDS)

ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

Protein sequence

MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRMDSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTVRNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIEDWGNIENSISKDFDYWLYC*
Homology
[Close]
BLAST of Csa3G730870.1 vs. TrEMBL
Match: A0A0A0LA48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G730870 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 7.8e-110
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60
           MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM
Sbjct: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60

Query: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120
           DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV
Sbjct: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120

Query: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180
           RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE
Sbjct: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180

Query: 181 DWGNIENSISKDFDYWLYC 200
           DWGNIENSISKDFDYWLYC
Sbjct: 181 DWGNIENSISKDFDYWLYC 199

[Close]
BLAST of Csa3G730870.1 vs. NCBI nr
Match: gi|700203590|gb|KGN58723.1| (hypothetical protein Csa_3G730870 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-109
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60
           MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM
Sbjct: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60

Query: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120
           DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV
Sbjct: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120

Query: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180
           RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE
Sbjct: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180

Query: 181 DWGNIENSISKDFDYWLYC 200
           DWGNIENSISKDFDYWLYC
Sbjct: 181 DWGNIENSISKDFDYWLYC 199

The following BLAST results are available for this feature:
BLAST of Csa3G730870.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA48_CUCSA7.8e-110100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G730870 PE=4 SV=1[more]
BLAST of Csa3G730870.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203590|gb|KGN58723.1|1.1e-109100.00hypothetical protein Csa_3G730870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G730870Csa3G730870gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G730870.1Csa3G730870.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G730870.1.cds1Csa3G730870.1.cds1CDS
Csa3G730870.1.cds2Csa3G730870.1.cds2CDS
Csa3G730870.1.cds3Csa3G730870.1.cds3CDS