Csa3G730870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G730870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 27384898 .. 27386453 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGGTATCATCTCTCAATTTTCCTCTGATCAAGATCTGAGCAAAACCTTAGCCAATTCAAACAATAAAATTATTTTGAACAAACAAGTAAATCGAGCTTCGAATACACCGATAGTATTCTGAAAATTAACTTCTGGCAAGAGAATAAAATAAAATCAACCCCTCTTTTGTTGACTGACTTGTAAAAGAACAGTCAGAGCTTTAAAAGTGTTTGTTTTCCTTTTCACTGTTTCCTTTTTCTACTGACATTAATGTTGCGGGGCCAGGGAAAAGAAAACACAGTGTTCCTCATTTTTTCCATTAACAAGGTTGGTGACAAAAATGGCGTTAAGTATTTTTCCCCATCTACTACTGATTATGACTGCATTTATCATACTTTTCTGTTGAATAAAAAGACTTAACGAAGCAAAAGGCATGTGATTGCTCTACCAACTGAGAAGAAAATATCAGAAGGTTCCAAAATAGCTAAGATACGCTGCAAAGATTTTGCCTCACATTTCACCCACTTTAAAGCAAGAAAGAAAGTGACAACATCCTAACCCTCGCGCCAGAGTTTAATTTAATTTCATGATATTTGGATTTAACCTAACTGTTTGAGTTGTGAATTTAAATAGTTTATTGTTTAAGCTAGGAAGCAAACCTCAAAGAAAATTGAACTCTGAGTTCTATTTCCATGAACTGAAACTCTTTAATCAAAACTCTGTTATCAAAAAAATCAATTCAACTTCAGAGACAGAATAATCGTAAAATACTCACTTTCTCATTTGCTCGTCGAGTGATCGGTCAGTGTATGTCGCAATTAGTGGCATTACTCCGTTACTGCAACCTACATTCATAGAGACGATGACATCCAAAGGCAGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGGTTAGAAGATGATATTGTATAATTGATGAAGAATAGTACTCGTAATCTTGATGAAGAGTATGGGAGGACACTGTTTAGCCTGTGAATGGTCGGAATGTAGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

mRNA sequence

ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

Coding sequence (CDS)

ATGCCTTCTTCATTTGATCGCCCCTCCCCTAATCAAATCACAGTTCTCATGAATCACCGCCAAGCAGTGTTGTTCATCCCTGATCTCCGGCTCCGAATTGCCGTGGAATTTCAGCTCAAACATACCAAGCGATGCTGCAAAAGCCTAATTGAGCAAGAAGAACCAGTGAAACTCAGGATGGATAGCGCCGCGATAGAGAAATCGCCAACCCGTAAACGGAACCGCCTTCAATCAACGGCGCTATCCCTCCTGAGCTTCAGAGGATTCTTCTTAACTTCAGTCGATGTTTCCAACAGCGGCAAACCATTGTTATTAAGTAGAGAGAGAAAAAACAAACGTAGGATGATGGGAAACACAGTGAGAAATGGCAACAGGGAATTGTTTCACCCCTTTTCTTCTTTCCTTTTGACTACTCTACACCATCTTGCCGACTACGATGCTTTACACTTTTCTTGCGCTGCATTCCCCAACGCTGCTGCAAGGCAATGCACGACTGAAATACTAAAGCAGGAGTACTTAACGAAATTAATACCAATTGAAGACTGGGGCAATATTGAGAACAGTATCAGCAAAGATTTTGATTATTGGCTGTATTGCTAG

Protein sequence

MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRMDSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTVRNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIEDWGNIENSISKDFDYWLYC*
Homology
[Close]
BLAST of Csa3G730870 vs. TrEMBL
Match: A0A0A0LA48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G730870 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 7.8e-110
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60
           MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM
Sbjct: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60

Query: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120
           DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV
Sbjct: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120

Query: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180
           RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE
Sbjct: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180

Query: 181 DWGNIENSISKDFDYWLYC 200
           DWGNIENSISKDFDYWLYC
Sbjct: 181 DWGNIENSISKDFDYWLYC 199

[Close]
BLAST of Csa3G730870 vs. NCBI nr
Match: gi|700203590|gb|KGN58723.1| (hypothetical protein Csa_3G730870 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-109
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1 

Query: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60
           MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM
Sbjct: 1   MPSSFDRPSPNQITVLMNHRQAVLFIPDLRLRIAVEFQLKHTKRCCKSLIEQEEPVKLRM 60

Query: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120
           DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV
Sbjct: 61  DSAAIEKSPTRKRNRLQSTALSLLSFRGFFLTSVDVSNSGKPLLLSRERKNKRRMMGNTV 120

Query: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180
           RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE
Sbjct: 121 RNGNRELFHPFSSFLLTTLHHLADYDALHFSCAAFPNAAARQCTTEILKQEYLTKLIPIE 180

Query: 181 DWGNIENSISKDFDYWLYC 200
           DWGNIENSISKDFDYWLYC
Sbjct: 181 DWGNIENSISKDFDYWLYC 199

The following BLAST results are available for this feature:
BLAST of Csa3G730870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LA48_CUCSA7.8e-110100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G730870 PE=4 SV=1[more]
BLAST of Csa3G730870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203590|gb|KGN58723.1|1.1e-109100.00hypothetical protein Csa_3G730870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G730870.1Csa3G730870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G730870CSPI03G30960Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G730870Cucumber (Chinese Long) v2cucuB091
Csa3G730870Cucumber (Gy14) v1cgycuB179
Csa3G730870Cucumber (Gy14) v1cgycuB268
Csa3G730870Cucurbita maxima (Rimu)cmacuB240
Csa3G730870Cucurbita maxima (Rimu)cmacuB657
Csa3G730870Cucurbita maxima (Rimu)cmacuB698
Csa3G730870Cucurbita maxima (Rimu)cmacuB815
Csa3G730870Cucurbita maxima (Rimu)cmacuB855
Csa3G730870Cucurbita moschata (Rifu)cmocuB227
Csa3G730870Cucurbita moschata (Rifu)cmocuB449
Csa3G730870Cucurbita moschata (Rifu)cmocuB647
Csa3G730870Cucurbita moschata (Rifu)cmocuB688
Csa3G730870Cucurbita moschata (Rifu)cmocuB807
Csa3G730870Melon (DHL92) v3.5.1cumeB224
Csa3G730870Melon (DHL92) v3.5.1cumeB264
Csa3G730870Watermelon (Charleston Gray)cuwcgB195
Csa3G730870Watermelon (Charleston Gray)cuwcgB220
Csa3G730870Watermelon (97103) v1cuwmB199
Csa3G730870Watermelon (97103) v1cuwmB265
Csa3G730870Cucurbita pepo (Zucchini)cpecuB068
Csa3G730870Cucurbita pepo (Zucchini)cpecuB390
Csa3G730870Cucurbita pepo (Zucchini)cpecuB485
Csa3G730870Cucurbita pepo (Zucchini)cpecuB598
Csa3G730870Cucurbita pepo (Zucchini)cpecuB860
Csa3G730870Bottle gourd (USVL1VR-Ls)culsiB169
Csa3G730870Bottle gourd (USVL1VR-Ls)culsiB187
Csa3G730870Cucumber (Gy14) v2cgybcuB111
Csa3G730870Cucumber (Gy14) v2cgybcuB162
Csa3G730870Melon (DHL92) v3.6.1cumedB209
Csa3G730870Melon (DHL92) v3.6.1cumedB248
Csa3G730870Silver-seed gourdcarcuB0175
Csa3G730870Silver-seed gourdcarcuB0308
Csa3G730870Silver-seed gourdcarcuB0584
Csa3G730870Silver-seed gourdcarcuB0683
Csa3G730870Silver-seed gourdcarcuB1011
Csa3G730870Watermelon (97103) v2cuwmbB187
Csa3G730870Watermelon (97103) v2cuwmbB202
Csa3G730870Wax gourdcuwgoB219
Csa3G730870Wax gourdcuwgoB328