Csa3G644770.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G644770.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 25244930 .. 25245157 (-)
Sequence length	228

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTCGTGGCATAAGGCTTCTGCAAGGTCATGTCGCGGAAGCCGTCTACAACGTTATGCAATGTACGCCGAGGAAATTTTTTCTATCGTTGATGTGAGCTGCTTCGGGGAAATTGGTATCCCCGTTGTGTTTTCTGTGATGTGTCTGTCAACATCGTCCGCGACGTCGCAGCAACCTTCTCCGACGTTGGTTAGGGTTTCTGATAACGTATTGCTACGCCTTTAA

mRNA sequence

ATGTGTTCGTGGCATAAGGCTTCTGCAAGGTCATGTCGCGGAAGCCGTCTACAACGTTATGCAATGTACGCCGAGGAAATTTTTTCTATCGTTGATGTGAGCTGCTTCGGGGAAATTGGTATCCCCGTTGTGTTTTCTGTGATGTGTCTGTCAACATCGTCCGCGACGTCGCAGCAACCTTCTCCGACGTTGGTTAGGGTTTCTGATAACGTATTGCTACGCCTTTAA

Coding sequence (CDS)

ATGTGTTCGTGGCATAAGGCTTCTGCAAGGTCATGTCGCGGAAGCCGTCTACAACGTTATGCAATGTACGCCGAGGAAATTTTTTCTATCGTTGATGTGAGCTGCTTCGGGGAAATTGGTATCCCCGTTGTGTTTTCTGTGATGTGTCTGTCAACATCGTCCGCGACGTCGCAGCAACCTTCTCCGACGTTGGTTAGGGTTTCTGATAACGTATTGCTACGCCTTTAA

Protein sequence

MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQPSPTLVRVSDNVLLRL*

Homology

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BLAST of Csa3G644770.1 vs. TrEMBL
Match: A0A0A0L9C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644770 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP 60
          MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP
Sbjct: 1  MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP 60

Query: 61 SPTLVRVSDNVLLRL 76
          SPTLVRVSDNVLLRL
Sbjct: 61 SPTLVRVSDNVLLRL 75

[Close]

BLAST of Csa3G644770.1 vs. NCBI nr
Match: gi|700203305|gb|KGN58438.1| (hypothetical protein Csa_3G644770 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP 60
          MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP
Sbjct: 1  MCSWHKASARSCRGSRLQRYAMYAEEIFSIVDVSCFGEIGIPVVFSVMCLSTSSATSQQP 60

Query: 61 SPTLVRVSDNVLLRL 76
          SPTLVRVSDNVLLRL
Sbjct: 61 SPTLVRVSDNVLLRL 75

The following BLAST results are available for this feature:

BLAST of Csa3G644770.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9C3_CUCSA	2.7e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644770 PE=4 SV=1	[more]

BLAST of Csa3G644770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203305\|gb\|KGN58438.1\|	3.8e-34	100.00	hypothetical protein Csa_3G644770 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G644770	Csa3G644770	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G644770.1	Csa3G644770.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G644770.1.cds1	Csa3G644770.1.cds1	CDS