Csa3G215630.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G215630.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14427676 .. 14429052 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGTATGCCCATTGTTTAAGCTAACACACAAATATTTTCTTCACAATCTAATCTCTGTTGCTTACTCTCTCTGTATTCTATTTGCTTACTCCTTTGTTTCAGTTCGGATTACTGAGATAATTGCAATCGAAATACCTTTTTGGAACATCAAAGTTTTCTTCCATTTGTTAACTGTTCCTGTTGGATTCTGGATTTTCCTTTATGTGACGTTATTATAACTACAGCAATGGGGTCTATTCCACATAATTTGTGTCCACCCCCACATAGAATTTCTGAAGAGATCATCCAATTTAGAACTTTTTCAGACTTTTGTTGGTATAGATAGATAGGAATTGGATCATTTAATTATTTTGAAGTTTCTTATATCATATTTGTACAAGTTTAGAGGCCTCTTTGTCAAATGAGTCATAACTGTGTTTGGTTGTAGCCTAACCTAAGAACATCAAATAGGAAGAAACATCACGTACCCTAATCTTTGACTCAGAGAGAGATCAATAAGATTTTAGAAACAAAGAAACAAATGTAAAAATTTTTCCTTAGAGCTACAAAGTGCTTGACAGAAACTTACACATCTAAAGTTAGTTGAAGAAATCGATGATTTTTCTACTTGGATTTGGAACAGAACAACTATGCAATTCTTAAGGTTAAGGTCTTCATTGTTTTTGCTATGAACATGGAGAGATCAATGTCTGCTCATTTTTGCCTCTTGATTTGGGTATAAAAAAAGTATGGTTACGATTATCTTTCTATTTGATATGATGGCAAGGTCTCAACTAGAAGTTTTTTTTTATAGCAATAGAAGGTGCGCTTTTGTTGTACTCTACTCTAAAACTTTAAATTTAGTGTTTAGAGGTCGTTAAGAAAATCTGTCCCCGAGATATTGTGTTGGTTATTGGTAGGTCGCTGTTATAGTTCGAGGAATATAATAGTGATCTGGTTGGGATGATAACTATTTTAGTTGGTAATAGTAAACACAGTAACAAAGAGGGATAGAGATGATGAGTGAAAAATGGTAAATATGAAGCATGATACATCAATTATTATAATTGGAATTTCGAACATGGAGTAGGTTGTAATAGCTCAGTTCACTCACTTGAAGCCTGCCTGTTGAGTTTGACATCTGTCTTCTCCGAAAATTTCCCTCTCACCTACCAACACGCTTACAGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

mRNA sequence

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Coding sequence (CDS)

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Protein sequence

MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSGALTRGFEFQC*
Homology
[Close]
BLAST of Csa3G215630.1 vs. TrEMBL
Match: A0A0A0L6J5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

[Close]
BLAST of Csa3G215630.1 vs. NCBI nr
Match: gi|700202442|gb|KGN57575.1| (hypothetical protein Csa_3G215630 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 9.4e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

The following BLAST results are available for this feature:
BLAST of Csa3G215630.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6J5_CUCSA6.5e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1[more]
BLAST of Csa3G215630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202442|gb|KGN57575.1|9.4e-35100.00hypothetical protein Csa_3G215630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G215630Csa3G215630gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G215630.1Csa3G215630.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G215630.1.cds1Csa3G215630.1.cds1CDS
Csa3G215630.1.cds2Csa3G215630.1.cds2CDS