Csa3G215630 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G215630
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14427676 .. 14429052 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGTATGCCCATTGTTTAAGCTAACACACAAATATTTTCTTCACAATCTAATCTCTGTTGCTTACTCTCTCTGTATTCTATTTGCTTACTCCTTTGTTTCAGTTCGGATTACTGAGATAATTGCAATCGAAATACCTTTTTGGAACATCAAAGTTTTCTTCCATTTGTTAACTGTTCCTGTTGGATTCTGGATTTTCCTTTATGTGACGTTATTATAACTACAGCAATGGGGTCTATTCCACATAATTTGTGTCCACCCCCACATAGAATTTCTGAAGAGATCATCCAATTTAGAACTTTTTCAGACTTTTGTTGGTATAGATAGATAGGAATTGGATCATTTAATTATTTTGAAGTTTCTTATATCATATTTGTACAAGTTTAGAGGCCTCTTTGTCAAATGAGTCATAACTGTGTTTGGTTGTAGCCTAACCTAAGAACATCAAATAGGAAGAAACATCACGTACCCTAATCTTTGACTCAGAGAGAGATCAATAAGATTTTAGAAACAAAGAAACAAATGTAAAAATTTTTCCTTAGAGCTACAAAGTGCTTGACAGAAACTTACACATCTAAAGTTAGTTGAAGAAATCGATGATTTTTCTACTTGGATTTGGAACAGAACAACTATGCAATTCTTAAGGTTAAGGTCTTCATTGTTTTTGCTATGAACATGGAGAGATCAATGTCTGCTCATTTTTGCCTCTTGATTTGGGTATAAAAAAAGTATGGTTACGATTATCTTTCTATTTGATATGATGGCAAGGTCTCAACTAGAAGTTTTTTTTTATAGCAATAGAAGGTGCGCTTTTGTTGTACTCTACTCTAAAACTTTAAATTTAGTGTTTAGAGGTCGTTAAGAAAATCTGTCCCCGAGATATTGTGTTGGTTATTGGTAGGTCGCTGTTATAGTTCGAGGAATATAATAGTGATCTGGTTGGGATGATAACTATTTTAGTTGGTAATAGTAAACACAGTAACAAAGAGGGATAGAGATGATGAGTGAAAAATGGTAAATATGAAGCATGATACATCAATTATTATAATTGGAATTTCGAACATGGAGTAGGTTGTAATAGCTCAGTTCACTCACTTGAAGCCTGCCTGTTGAGTTTGACATCTGTCTTCTCCGAAAATTTCCCTCTCACCTACCAACACGCTTACAGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

mRNA sequence

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Coding sequence (CDS)

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Protein sequence

MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSGALTRGFEFQC*
Homology
[Close]
BLAST of Csa3G215630 vs. TrEMBL
Match: A0A0A0L6J5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

[Close]
BLAST of Csa3G215630 vs. NCBI nr
Match: gi|700202442|gb|KGN57575.1| (hypothetical protein Csa_3G215630 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 9.4e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

The following BLAST results are available for this feature:
BLAST of Csa3G215630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6J5_CUCSA6.5e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1[more]
BLAST of Csa3G215630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202442|gb|KGN57575.1|9.4e-35100.00hypothetical protein Csa_3G215630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010582 floral meristem determinacy
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139201cucumber EST collection version 3.0transcribed_cluster
CU168852cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G215630.1Csa3G215630.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU139201CU139201transcribed_cluster
CU168852CU168852transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G215630CsGy3G018770Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G215630Watermelon (97103) v2cuwmbB215
Csa3G215630Wax gourdcuwgoB283
Csa3G215630Cucumber (Gy14) v1cgycuB003
Csa3G215630Cucurbita maxima (Rimu)cmacuB320
Csa3G215630Cucurbita maxima (Rimu)cmacuB697
Csa3G215630Cucurbita moschata (Rifu)cmocuB307
Csa3G215630Cucurbita moschata (Rifu)cmocuB687
Csa3G215630Melon (DHL92) v3.5.1cumeB163
Csa3G215630Melon (DHL92) v3.5.1cumeB166
Csa3G215630Watermelon (Charleston Gray)cuwcgB230
Csa3G215630Watermelon (97103) v1cuwmB243
Csa3G215630Cucurbita pepo (Zucchini)cpecuB205
Csa3G215630Cucurbita pepo (Zucchini)cpecuB389
Csa3G215630Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G215630Melon (DHL92) v3.6.1cumedB232
Csa3G215630Melon (DHL92) v3.6.1cumedB238
Csa3G215630Silver-seed gourdcarcuB0064
Csa3G215630Silver-seed gourdcarcuB0065
Csa3G215630Silver-seed gourdcarcuB0675