Csa3G215630 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G215630
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 14427676 .. 14429052 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGTATGCCCATTGTTTAAGCTAACACACAAATATTTTCTTCACAATCTAATCTCTGTTGCTTACTCTCTCTGTATTCTATTTGCTTACTCCTTTGTTTCAGTTCGGATTACTGAGATAATTGCAATCGAAATACCTTTTTGGAACATCAAAGTTTTCTTCCATTTGTTAACTGTTCCTGTTGGATTCTGGATTTTCCTTTATGTGACGTTATTATAACTACAGCAATGGGGTCTATTCCACATAATTTGTGTCCACCCCCACATAGAATTTCTGAAGAGATCATCCAATTTAGAACTTTTTCAGACTTTTGTTGGTATAGATAGATAGGAATTGGATCATTTAATTATTTTGAAGTTTCTTATATCATATTTGTACAAGTTTAGAGGCCTCTTTGTCAAATGAGTCATAACTGTGTTTGGTTGTAGCCTAACCTAAGAACATCAAATAGGAAGAAACATCACGTACCCTAATCTTTGACTCAGAGAGAGATCAATAAGATTTTAGAAACAAAGAAACAAATGTAAAAATTTTTCCTTAGAGCTACAAAGTGCTTGACAGAAACTTACACATCTAAAGTTAGTTGAAGAAATCGATGATTTTTCTACTTGGATTTGGAACAGAACAACTATGCAATTCTTAAGGTTAAGGTCTTCATTGTTTTTGCTATGAACATGGAGAGATCAATGTCTGCTCATTTTTGCCTCTTGATTTGGGTATAAAAAAAGTATGGTTACGATTATCTTTCTATTTGATATGATGGCAAGGTCTCAACTAGAAGTTTTTTTTTATAGCAATAGAAGGTGCGCTTTTGTTGTACTCTACTCTAAAACTTTAAATTTAGTGTTTAGAGGTCGTTAAGAAAATCTGTCCCCGAGATATTGTGTTGGTTATTGGTAGGTCGCTGTTATAGTTCGAGGAATATAATAGTGATCTGGTTGGGATGATAACTATTTTAGTTGGTAATAGTAAACACAGTAACAAAGAGGGATAGAGATGATGAGTGAAAAATGGTAAATATGAAGCATGATACATCAATTATTATAATTGGAATTTCGAACATGGAGTAGGTTGTAATAGCTCAGTTCACTCACTTGAAGCCTGCCTGTTGAGTTTGACATCTGTCTTCTCCGAAAATTTCCCTCTCACCTACCAACACGCTTACAGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

mRNA sequence

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Coding sequence (CDS)

ATGAGATTTTTTGTGGTGCATTTCATTCGCCACAACCTTAGATTCTTGACGAAACCGAAAACCCGGAGTACACAGTACCCCCAGACGCTTCCTTCTGATACAACGGCCGCCAACCGTATTCCCTTCACGCTTCCTCCTCCGCCGCCACCGCCACCGCCCACCGCCCCTAACTTTTCCGGAGCTCTGACGAGAGGATTTGAATTTCAGTGTTGA

Protein sequence

MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSGALTRGFEFQC*
Homology
[Close]
BLAST of Csa3G215630 vs. TrEMBL
Match: A0A0A0L6J5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

[Close]
BLAST of Csa3G215630 vs. NCBI nr
Match: gi|700202442|gb|KGN57575.1| (hypothetical protein Csa_3G215630 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 9.4e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60
          MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG
Sbjct: 1  MRFFVVHFIRHNLRFLTKPKTRSTQYPQTLPSDTTAANRIPFTLPPPPPPPPPTAPNFSG 60

Query: 61 ALTRGFEFQC 71
          ALTRGFEFQC
Sbjct: 61 ALTRGFEFQC 70

The following BLAST results are available for this feature:
BLAST of Csa3G215630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6J5_CUCSA6.5e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215630 PE=4 SV=1[more]
BLAST of Csa3G215630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202442|gb|KGN57575.1|9.4e-35100.00hypothetical protein Csa_3G215630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010582 floral meristem determinacy
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139201cucumber EST collection version 3.0transcribed_cluster
CU168852cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G215630.1Csa3G215630.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU139201CU139201transcribed_cluster
CU168852CU168852transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G215630CsGy3G018770Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G215630Cucurbita moschata (Rifu)cmocuB687
Csa3G215630Melon (DHL92) v3.5.1cumeB163
Csa3G215630Melon (DHL92) v3.5.1cumeB166
Csa3G215630Watermelon (Charleston Gray)cuwcgB230
Csa3G215630Watermelon (97103) v1cuwmB243
Csa3G215630Cucurbita pepo (Zucchini)cpecuB205
Csa3G215630Cucurbita pepo (Zucchini)cpecuB389
Csa3G215630Bottle gourd (USVL1VR-Ls)culsiB211
Csa3G215630Melon (DHL92) v3.6.1cumedB232
Csa3G215630Melon (DHL92) v3.6.1cumedB238
Csa3G215630Silver-seed gourdcarcuB0064
Csa3G215630Silver-seed gourdcarcuB0065
Csa3G215630Silver-seed gourdcarcuB0675
Csa3G215630Watermelon (97103) v2cuwmbB215
Csa3G215630Wax gourdcuwgoB283
Csa3G215630Cucumber (Gy14) v1cgycuB003
Csa3G215630Cucurbita maxima (Rimu)cmacuB320
Csa3G215630Cucurbita maxima (Rimu)cmacuB697
Csa3G215630Cucurbita moschata (Rifu)cmocuB307