Csa3G198460.2 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G198460.2
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	WGS project CAID00000000 data, contig chromosome 05
Location	Chr3 : 13557680 .. 13558634 (-)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGAGGAAGAAAGGAAGGAAGAAAGAAGATGTTAGGATTCTCGAAAGCAGAGTCAAAATCAAAATCCTAAAACTCCAGAATGCTAACCCATGTAAAAGGTCCACTTCCCCCAACTCCACCAACCCTACCACATCCTAATTGGAACACCACCGTCCTCCGATTCACCGCTCCCCTCGCCCTTACCACATCCACTTGCCGTATAGCAACCACTGCGGCAGCGATTCTCGCAGCTGCAGCCGTGATTGCTTCGCCTCCCCCGTCTGCCGCCACCGAGACCAGCGCTACCTTATCAGAACAACAAGAAGAAAGTAGTACGCTGTCGAACATTCCGCAGACTCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCTTGCACGATAAAGTGCGTGGGAACTTGCATTAGAGGCGGCGATGGATCTCCCGGAGAAGGGCCTCTGAACATCAGGAGGTAATAATTAGTAGAAATTGTTGAGAATTAAGTGGAATTGTTAGTGATTGATGTGGAAAATTTTGTTGGTTTTGTAGACCAATTGTTGTTTTCAAGCAAGGGTTTCGAAGTCGTCAATACTGGTGCGTATGCGTCTCTTTAAATCTTCCAAGTTTGTTTTCTTTGATCTTATTTGATTTGAATGGTGATCCTTAATGATTGGTTGAGTTTTGGGGATGTTGCAGTTTGGTGGAATGTTCAGATATATGCAATTTGATCGGAGATGGTGATGATGGACCTTAACAACATTTTTCTCTTTCTTTTTTCTATATTTCTCCTCACATTTCTTTTTTCTCTTTCCTTTATTTCATTCATGAAATAAATTTTATGTCATTCTTTTTCCCCTAAAAACAATTCCTTCCAAATGCTGGATTACTTTAATTACAATATAATATTTTAATACTAATTCAAGCATTACAATC

mRNA sequence

ATGCTAACCCATGTAAAAGGTCCACTTCCCCCAACTCCACCAACCCTACCACATCCTAATTGGAACACCACCGTCCTCCGATTCACCGCTCCCCTCGCCCTTACCACATCCACTTGCCGTATAGCAACCACTGCGGCAGCGATTCTCGCAGCTGCAGCCGTGATTGCTTCGCCTCCCCCGTCTGCCGCCACCGAGACCAGCGCTACCTTATCAGAACAACAAGAAGAAAGTAGTACGCTGTCGAACATTCCGCAGACTCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCTTGCACGATAAAGTGCGTGGGAACTTGCATTAGAGGCGGCGATGGATCTCCCGGAGAAGGGCCTCTGAACATCAGGAGGTAA

Coding sequence (CDS)

ATGCTAACCCATGTAAAAGGTCCACTTCCCCCAACTCCACCAACCCTACCACATCCTAATTGGAACACCACCGTCCTCCGATTCACCGCTCCCCTCGCCCTTACCACATCCACTTGCCGTATAGCAACCACTGCGGCAGCGATTCTCGCAGCTGCAGCCGTGATTGCTTCGCCTCCCCCGTCTGCCGCCACCGAGACCAGCGCTACCTTATCAGAACAACAAGAAGAAAGTAGTACGCTGTCGAACATTCCGCAGACTCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCTTGCACGATAAAGTGCGTGGGAACTTGCATTAGAGGCGGCGATGGATCTCCCGGAGAAGGGCCTCTGAACATCAGGAGGTAA

Protein sequence

MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR*

Homology

[Close]

BLAST of Csa3G198460.2 vs. TrEMBL
Match: A0A0A0LA46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.1e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP 60
           MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP
Sbjct: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP 60

Query: 61  SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRR 139
           CIRGGDGSPGEGPLNIRR
Sbjct: 121 CIRGGDGSPGEGPLNIRR 138

[Close]

BLAST of Csa3G198460.2 vs. TrEMBL
Match: U5GB13_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.0e-29
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 34  LTTSTCRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSG-ECA 93
           +T  + R + T  ++ AA AV+AS    A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 94  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Csa3G198460.2 vs. TrEMBL
Match: U5G8N3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.0e-29
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 34  LTTSTCRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSG-ECA 93
           +T  + R + T  ++ AA AV+AS    A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 94  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Csa3G198460.2 vs. TrEMBL
Match: M5X7W8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022787mg PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 69/91 (75.82%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 48  ILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKS 107
           +LAAAAVI S   SAA E+        E S TLSNIPQTLSGECA P+DCKKARIQRPKS
Sbjct: 1   LLAAAAVITSA--SAAMESP-------ENSETLSNIPQTLSGECALPTDCKKARIQRPKS 60

Query: 108 RKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
           RKAESCTIKCV TCIRGGDGSPGEGP N+RR
Sbjct: 61  RKAESCTIKCVTTCIRGGDGSPGEGPFNVRR 82

[Close]

BLAST of Csa3G198460.2 vs. TrEMBL
Match: V4SMX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029418mg PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-27
Identity = 66/100 (66.00%), Postives = 79/100 (79.00%), Query Frame = 1


Query: 39  CRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCK 98
           C IAT+A+ + AAA VIA+    AA++   T    Q+++ TLSNIPQ LSG+CA  +DC+
Sbjct: 40  CSIATSASGLFAAAVVIAA----AASDGIGT---PQDQAETLSNIPQELSGDCASGNDCR 99

Query: 99  KARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
           K RIQRPKSRKAESCTIKCV TCIRGGDGSPGEGPLN+RR
Sbjct: 100 KPRIQRPKSRKAESCTIKCVTTCIRGGDGSPGEGPLNVRR 132

[Close]

BLAST of Csa3G198460.2 vs. TAIR10
Match: AT1G78995.1 (AT1G78995.1 unknown protein)

HSP 1 Score: 100.5 bits (249), Expect = 8.5e-22
Identity = 58/113 (51.33%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 29  TAPLALTTSTCRIATTAAAILAAAAVIAS---PPPSAATETSATLSEQQEESSTLSNIPQ 88
           T   A+  ST  I   AAA++ AA  +AS   PPP              ++  TLSN+PQ
Sbjct: 35  TRSAAVRISTATIGAIAAAVMMAAVSVASAELPPPP-------------QDGETLSNVPQ 94

Query: 89  TLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
           TLSGE     DCKK RIQRPKS+ AE CT+KCV TCIR GD   GEGP+NIRR
Sbjct: 95  TLSGE-----DCKKQRIQRPKSKNAEKCTVKCVNTCIRSGD---GEGPINIRR 126

[Close]

BLAST of Csa3G198460.2 vs. NCBI nr
Match: gi|449445931|ref|XP_004140725.1| (PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 5.8e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP 60
           MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP
Sbjct: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP 60

Query: 61  SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRR 139
           CIRGGDGSPGEGPLNIRR
Sbjct: 121 CIRGGDGSPGEGPLNIRR 138

[Close]

BLAST of Csa3G198460.2 vs. NCBI nr
Match: gi|659112369|ref|XP_008456185.1| (PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 7.9e-70
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 1


Query: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPPP 60
           ML+HVKGP PP PPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASP P
Sbjct: 1   MLSHVKGPFPPIPPTLPHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPLP 60

Query: 61  SAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           SAATETSAT+SEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  SAATETSATVSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRR 139
           CIRGGDGSPGEGPLNIRR
Sbjct: 121 CIRGGDGSPGEGPLNIRR 138

[Close]

BLAST of Csa3G198460.2 vs. NCBI nr
Match: gi|645280166|ref|XP_008245063.1| (PREDICTED: uncharacterized protein LOC103343169 [Prunus mume])

HSP 1 Score: 138.7 bits (348), Expect = 8.0e-30
Identity = 72/98 (73.47%), Postives = 76/98 (77.55%), Query Frame = 1


Query: 41  IATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKA 100
           I    A +LAAAAVIAS   SAA E+        E S TLSNIPQTLSGECA P+DCKKA
Sbjct: 67  ILLATAGLLAAAAVIASASASAAMESP-------ENSETLSNIPQTLSGECALPTDCKKA 126

Query: 101 RIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
           RIQRPKSRKAESCTIKCV TCIRGGDGSPGEGP N+RR
Sbjct: 127 RIQRPKSRKAESCTIKCVTTCIRGGDGSPGEGPFNVRR 157

[Close]

BLAST of Csa3G198460.2 vs. NCBI nr
Match: gi|566181421|ref|XP_006380835.1| (hypothetical protein POPTR_0007s15070g [Populus trichocarpa])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 34  LTTSTCRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSG-ECA 93
           +T  + R + T  ++ AA AV+AS    A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 94  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Csa3G198460.2 vs. NCBI nr
Match: gi|566181417|ref|XP_006380834.1| (hypothetical protein POPTR_0007s15070g [Populus trichocarpa])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 34  LTTSTCRIATTAAAILAAAAVIASPPPSAATETSATLSEQQEESSTLSNIPQTLSG-ECA 93
           +T  + R + T  ++ AA AV+AS    A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 94  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 139
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

The following BLAST results are available for this feature:

BLAST of Csa3G198460.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA46_CUCSA	4.1e-73	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1	[more]
U5GB13_POPTR	8.0e-29	63.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1	[more]
U5G8N3_POPTR	8.0e-29	63.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1	[more]
M5X7W8_PRUPE	1.5e-27	75.82	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022787mg PE=4 S...	[more]
V4SMX7_9ROSI	2.0e-27	66.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029418mg PE=4 SV=1	[more]

BLAST of Csa3G198460.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78995.1	8.5e-22	51.33	unknown protein	[more]

BLAST of Csa3G198460.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445931\|ref\|XP_004140725.1\|	5.8e-73	100.00	PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus]	[more]
gi\|659112369\|ref\|XP_008456185.1\|	7.9e-70	96.38	PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo]	[more]
gi\|645280166\|ref\|XP_008245063.1\|	8.0e-30	73.47	PREDICTED: uncharacterized protein LOC103343169 [Prunus mume]	[more]
gi\|566181421\|ref\|XP_006380835.1\|	1.1e-28	63.89	hypothetical protein POPTR_0007s15070g [Populus trichocarpa]	[more]
gi\|566181417\|ref\|XP_006380834.1\|	1.1e-28	63.89	hypothetical protein POPTR_0007s15070g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G198460	Csa3G198460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa3G198460.2	Csa3G198460.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G198460.2.utr3p2	Csa3G198460.2.utr3p2	three_prime_UTR
Csa3G198460.2.utr3p1	Csa3G198460.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G198460.2.cds1	Csa3G198460.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa3G198460.2.utr5p1	Csa3G198460.2.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36006	FAMILY NOT NAMED	coord: 40..138 score: 2.3
None	No IPR available	PANTHER	PTHR36006:SF2	SUBFAMILY NOT NAMED	coord: 40..138 score: 2.3