Csa3G141800.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G141800.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 9282842 .. 9283165 (+)
Sequence length324
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA

mRNA sequence

ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA

Coding sequence (CDS)

ATGGAGGAGGCGGAGAGGATCCATGGGAGATCGAGGCCATTGGAGAAGAATTTGCCTTGGGATGTTGTTATTAGAACGGAGCCAGGGGAAGCTCTGGCTTCGGCTTTGACTTGGGACAGAGCATTGAGTATGGAGTTTATTAAAGATGGGTTCAGCCAGTGCTCGTGGTTGCCGGTTAGTGTTAGAATGAACAGCTTCCCTCGCTTCTCCATACTGCACATTTTCGTAAGGAAGCTTTCCGGCAGCTTCACAATCAATGACCAGATTCCAAATCAATGTAAATTTAAACACTGCAACCGATACCCATTACGACAGGAGAGGTGA

Protein sequence

MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVSVRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER*
Homology
[Close]
BLAST of Csa3G141800.1 vs. TrEMBL
Match: A0A0A0L773_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60
           MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS
Sbjct: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 108
           VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER
Sbjct: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 107

[Close]
BLAST of Csa3G141800.1 vs. NCBI nr
Match: gi|700201751|gb|KGN56884.1| (hypothetical protein Csa_3G141800 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 3.8e-56
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60
           MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS
Sbjct: 1   MEEAERIHGRSRPLEKNLPWDVVIRTEPGEALASALTWDRALSMEFIKDGFSQCSWLPVS 60

Query: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 108
           VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER
Sbjct: 61  VRMNSFPRFSILHIFVRKLSGSFTINDQIPNQCKFKHCNRYPLRQER 107

The following BLAST results are available for this feature:
BLAST of Csa3G141800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L773_CUCSA2.7e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141800 PE=4 SV=1[more]
BLAST of Csa3G141800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201751|gb|KGN56884.1|3.8e-56100.00hypothetical protein Csa_3G141800 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G141800Csa3G141800gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G141800.1Csa3G141800.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G141800.1.cds1Csa3G141800.1.cds1CDS