Csa3G118210.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G118210.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 6566644 .. 6567033 (+)
Sequence length390
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAGGGGGCAGTAGCCAGGTGGGTGCAGTGGCACATAATGTCATCAAAGGCAATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAATTACTGATGCCTGCCAACAAATGCCAATCCTTTTTTTTTTTTTTTGTTTATATTTATATTCCTTTAATTGACAAAACCAACTTGGATAAGCCACGCGTGACGATATACTCAATGCGATTCCCTTATTTTACTACCAAAATCTCCTCCTCCCAGTCTCTTTCTCTCTCTCTGAAAATCTCTCTCCAGTATCTTCAATCACAGCATGGGTTTTTTCCCTTAAATCTAGCAGAGCTAATTGGAGTTTCTTCCAATGAATCATTTTTGAGATTCTTCTTCTTCCTGTTCTTTTGA

mRNA sequence

ATGAAGAAAGGGGGCAGTAGCCAGGTGGGTGCAGTGGCACATAATGTCATCAAAGGCAATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAATTACTGATGCCTGCCAACAAATGCCAATCCTTTTTTTTTTTTTTTGTTTATATTTATATTCCTTTAATTGACAAAACCAACTTGGATAAGCCACGCGTGACGATATACTCAATGCGATTCCCTTATTTTACTACCAAAATCTCCTCCTCCCAGTCTCTTTCTCTCTCTCTGAAAATCTCTCTCCAGTATCTTCAATCACAGCATGGGTTTTTTCCCTTAAATCTAGCAGAGCTAATTGGAGTTTCTTCCAATGAATCATTTTTGAGATTCTTCTTCTTCCTGTTCTTTTGA

Coding sequence (CDS)

ATGAAGAAAGGGGGCAGTAGCCAGGTGGGTGCAGTGGCACATAATGTCATCAAAGGCAATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAATTACTGATGCCTGCCAACAAATGCCAATCCTTTTTTTTTTTTTTTGTTTATATTTATATTCCTTTAATTGACAAAACCAACTTGGATAAGCCACGCGTGACGATATACTCAATGCGATTCCCTTATTTTACTACCAAAATCTCCTCCTCCCAGTCTCTTTCTCTCTCTCTGAAAATCTCTCTCCAGTATCTTCAATCACAGCATGGGTTTTTTCCCTTAAATCTAGCAGAGCTAATTGGAGTTTCTTCCAATGAATCATTTTTGAGATTCTTCTTCTTCCTGTTCTTTTGA

Protein sequence

MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTNLDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESFLRFFFFLFF*
Homology
[Close]
BLAST of Csa3G118210.1 vs. TrEMBL
Match: A0A0A0L313_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118210 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.4e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN 60
           MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN
Sbjct: 1   MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN 60

Query: 61  LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF 120
           LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF
Sbjct: 61  LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF 120

Query: 121 LRFFFFLFF 130
           LRFFFFLFF
Sbjct: 121 LRFFFFLFF 129

[Close]
BLAST of Csa3G118210.1 vs. NCBI nr
Match: gi|700201252|gb|KGN56385.1| (hypothetical protein Csa_3G118210 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 4.9e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 

Query: 1   MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN 60
           MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN
Sbjct: 1   MKKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTN 60

Query: 61  LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF 120
           LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF
Sbjct: 61  LDKPRVTIYSMRFPYFTTKISSSQSLSLSLKISLQYLQSQHGFFPLNLAELIGVSSNESF 120

Query: 121 LRFFFFLFF 130
           LRFFFFLFF
Sbjct: 121 LRFFFFLFF 129

The following BLAST results are available for this feature:
BLAST of Csa3G118210.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L313_CUCSA3.4e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118210 PE=4 SV=1[more]
BLAST of Csa3G118210.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201252|gb|KGN56385.1|4.9e-66100.00hypothetical protein Csa_3G118210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G118210Csa3G118210gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G118210.1Csa3G118210.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G118210.1.cds1Csa3G118210.1.cds1CDS