Csa3G011670.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G011670.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 1182931 .. 1183500 (+)
Sequence length342
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATGTAAAAAGTGTGGAGACCTATTATGGGAAGGAATGACAATGGAATTCTCTGAGTCTTTTGAATTGATGAATCTGAAGCATAAGGTATATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAGGCTCAAGGTAATTCTAGTAATCAAAATTCCCAGCAAATTTTCACCTAAATTTAAATAGGATGGATATTGACTGCAAGTGTAGACAAGTTTCTACAGAGATAAGCTTAACATAAACACTTTAGTTTGGCTAGTATG

mRNA sequence

ATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAG

Coding sequence (CDS)

ATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAG

Protein sequence

MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDSLTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL*
Homology
[Close]
BLAST of Csa3G011670.1 vs. TrEMBL
Match: A0A0A0L1A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011670 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.4e-60
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60
           MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS
Sbjct: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60

Query: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 114
           LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL
Sbjct: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 113

[Close]
BLAST of Csa3G011670.1 vs. NCBI nr
Match: gi|700200632|gb|KGN55765.1| (hypothetical protein Csa_3G011670 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60
           MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS
Sbjct: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60

Query: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 114
           LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL
Sbjct: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 113

The following BLAST results are available for this feature:
BLAST of Csa3G011670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1A2_CUCSA9.4e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011670 PE=4 SV=1[more]
BLAST of Csa3G011670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200632|gb|KGN55765.1|1.3e-59100.00hypothetical protein Csa_3G011670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G011670Csa3G011670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G011670.1Csa3G011670.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G011670.1.utr5p1Csa3G011670.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G011670.1.cds1Csa3G011670.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G011670.1.utr3p1Csa3G011670.1.utr3p1three_prime_UTR