Csa3G011670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G011670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 1182931 .. 1183500 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATGTAAAAAGTGTGGAGACCTATTATGGGAAGGAATGACAATGGAATTCTCTGAGTCTTTTGAATTGATGAATCTGAAGCATAAGGTATATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAGGCTCAAGGTAATTCTAGTAATCAAAATTCCCAGCAAATTTTCACCTAAATTTAAATAGGATGGATATTGACTGCAAGTGTAGACAAGTTTCTACAGAGATAAGCTTAACATAAACACTTTAGTTTGGCTAGTATG

mRNA sequence

ATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAG

Coding sequence (CDS)

ATGAGAGATCCAAACAAACGAGCAATACAAGAAAAAGATATTTCATCAATAGATGGACCCACGAGACAACCCTTCACCAATAGATCCTTCAATCACAAAACACCCTCGCCCAATTATATAGAATTCTGGAGAGCAAATGCAGCACCGTATCTAACTTCTACATGGTCCAACAAAGACTCACTGACTACCACAAATATTCAGTTTCAAGCATACTTGTGTTATGTCAATACGATGGCTGTGGTATTGGAGAAAGATCATAGATGCCTGTTTCAGGATGGTATAGACCAGATTATGCTTCAGAAAATACTATCCGTCGCCATTTATGCCGACTGCTTCCTCTAG

Protein sequence

MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDSLTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL*
Homology
[Close]
BLAST of Csa3G011670 vs. TrEMBL
Match: A0A0A0L1A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011670 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 9.4e-60
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60
           MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS
Sbjct: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60

Query: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 114
           LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL
Sbjct: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 113

[Close]
BLAST of Csa3G011670 vs. NCBI nr
Match: gi|700200632|gb|KGN55765.1| (hypothetical protein Csa_3G011670 [Cucumis sativus])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1 

Query: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60
           MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS
Sbjct: 1   MRDPNKRAIQEKDISSIDGPTRQPFTNRSFNHKTPSPNYIEFWRANAAPYLTSTWSNKDS 60

Query: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 114
           LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL
Sbjct: 61  LTTTNIQFQAYLCYVNTMAVVLEKDHRCLFQDGIDQIMLQKILSVAIYADCFL 113

The following BLAST results are available for this feature:
BLAST of Csa3G011670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1A2_CUCSA9.4e-60100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011670 PE=4 SV=1[more]
BLAST of Csa3G011670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200632|gb|KGN55765.1|1.3e-59100.00hypothetical protein Csa_3G011670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090142cucumber EST collection version 3.0transcribed_cluster
CU100472cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G011670.1Csa3G011670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU100472CU100472transcribed_cluster
CU090142CU090142transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G011670ClCG10G001640Watermelon (Charleston Gray)cuwcgB189
Csa3G011670CSPI03G01710Wild cucumber (PI 183967)cpicuB120
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G011670Melon (DHL92) v3.5.1cumeB227
Csa3G011670Melon (DHL92) v3.5.1cumeB243
Csa3G011670Watermelon (Charleston Gray)cuwcgB176
Csa3G011670Watermelon (97103) v1cuwmB181
Csa3G011670Watermelon (97103) v1cuwmB200
Csa3G011670Cucurbita pepo (Zucchini)cpecuB212
Csa3G011670Cucurbita pepo (Zucchini)cpecuB241
Csa3G011670Cucurbita pepo (Zucchini)cpecuB718
Csa3G011670Cucurbita pepo (Zucchini)cpecuB863
Csa3G011670Bottle gourd (USVL1VR-Ls)culsiB148
Csa3G011670Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G011670Cucumber (Gy14) v2cgybcuB109
Csa3G011670Cucumber (Gy14) v2cgybcuB113
Csa3G011670Melon (DHL92) v3.6.1cumedB212
Csa3G011670Melon (DHL92) v3.6.1cumedB224
Csa3G011670Silver-seed gourdcarcuB0526
Csa3G011670Silver-seed gourdcarcuB0798
Csa3G011670Silver-seed gourdcarcuB0978
Csa3G011670Silver-seed gourdcarcuB0984
Csa3G011670Watermelon (97103) v2cuwmbB181
Csa3G011670Watermelon (97103) v2cuwmbB253
Csa3G011670Wax gourdcuwgoB237
Csa3G011670Wax gourdcuwgoB305
Csa3G011670Cucumber (Chinese Long) v2cucuB086
Csa3G011670Cucumber (Gy14) v1cgycuB451
Csa3G011670Cucumber (Gy14) v1cgycuB458
Csa3G011670Cucurbita maxima (Rimu)cmacuB326
Csa3G011670Cucurbita maxima (Rimu)cmacuB512
Csa3G011670Cucurbita maxima (Rimu)cmacuB602
Csa3G011670Cucurbita maxima (Rimu)cmacuB817
Csa3G011670Cucurbita moschata (Rifu)cmocuB316
Csa3G011670Cucurbita moschata (Rifu)cmocuB503
Csa3G011670Cucurbita moschata (Rifu)cmocuB592
Csa3G011670Cucurbita moschata (Rifu)cmocuB809