Csa3G002440.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa3G002440.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 309228 .. 309861 (-)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGGTGAGTGTAATTAGCTATGGCGTTTCTGATGCTTGAATCTCCCTTTCTTCTACGAAGAGCGGATTGCAGAGCTTGAGCTTGTTCTTGTATTTGTAATATCATGTCTCTTGTCTTCCCGCAGGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGTAAGCTGATTGATCGTAAATTGTAACGAGCAGCCATTGTTGGTTGCTTTAGGAAGCTTAAGTTTGAGGAATCTGCTGAGTTTGATGATGTTAAACTCTTATGAATCTGTTTATATATGGGCACATTGCAGGGTAA

mRNA sequence

ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGAGCGGATTGCAGAGCTTGAGCTTGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGGTAA

Coding sequence (CDS)

ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGAGCGGATTGCAGAGCTTGAGCTTGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGGTAA

Protein sequence

MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLSCSSILRVVGWDLEG*
Homology
[Close]
BLAST of Csa3G002440.1 vs. TrEMBL
Match: A0A0A0L1K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60
           MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN
Sbjct: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60

Query: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120
           PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS
Sbjct: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120

Query: 121 CSSILRVVGWDLEG 135
           CSSILRVVGWDLEG
Sbjct: 121 CSSILRVVGWDLEG 134

[Close]
BLAST of Csa3G002440.1 vs. NCBI nr
Match: gi|700200490|gb|KGN55623.1| (hypothetical protein Csa_3G002440 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.5e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60
           MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN
Sbjct: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60

Query: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120
           PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS
Sbjct: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120

Query: 121 CSSILRVVGWDLEG 135
           CSSILRVVGWDLEG
Sbjct: 121 CSSILRVVGWDLEG 134

The following BLAST results are available for this feature:
BLAST of Csa3G002440.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K1_CUCSA1.7e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1[more]
BLAST of Csa3G002440.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200490|gb|KGN55623.1|2.5e-68100.00hypothetical protein Csa_3G002440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa3G002440Csa3G002440gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa3G002440.1Csa3G002440.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa3G002440.1.cds4Csa3G002440.1.cds4CDS
Csa3G002440.1.cds3Csa3G002440.1.cds3CDS
Csa3G002440.1.cds2Csa3G002440.1.cds2CDS
Csa3G002440.1.cds1Csa3G002440.1.cds1CDS