Csa3G002440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G002440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 309228 .. 309861 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGGTGAGTGTAATTAGCTATGGCGTTTCTGATGCTTGAATCTCCCTTTCTTCTACGAAGAGCGGATTGCAGAGCTTGAGCTTGTTCTTGTATTTGTAATATCATGTCTCTTGTCTTCCCGCAGGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGTAAGCTGATTGATCGTAAATTGTAACGAGCAGCCATTGTTGGTTGCTTTAGGAAGCTTAAGTTTGAGGAATCTGCTGAGTTTGATGATGTTAAACTCTTATGAATCTGTTTATATATGGGCACATTGCAGGGTAA

mRNA sequence

ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGAGCGGATTGCAGAGCTTGAGCTTGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGGTAA

Coding sequence (CDS)

ATGATTCTTTTAGGCCTCGAATTACAGCGTAGAGGTGGAGATCTTGATTCATCAGTTGAGTTGATCCCATTTTCTCGTTCATTTGCTTTGTTGATGAGATCAATTTCAGTGCCTCCTTCTTCGTCTTCTTTCTCAGAGCGGATTGCAGAGCTTGAGCTTGTGTCTAAAAGCTTCATGAATCCATCGACTAGTTCGTCCACCCATTTCCGGTTCTGGTGTCTTGATAAGACCTGTTTGGTGGATGCCATTTGGAGAAGCTCATCCATGGAAGCGTATAAATCGTCCAGTCCCAATAAACCATTGCAGATTGACTTGGAAGTTGAAGGAGATGAGTTCTCAAATGGCTTCAACTTGCTTAGTTGCTCTTCGATTTTGAGAGTGGTGGGATGGGATCTTGAAGGGTAA

Protein sequence

MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMNPSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLSCSSILRVVGWDLEG*
Homology
[Close]
BLAST of Csa3G002440 vs. TrEMBL
Match: A0A0A0L1K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60
           MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN
Sbjct: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60

Query: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120
           PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS
Sbjct: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120

Query: 121 CSSILRVVGWDLEG 135
           CSSILRVVGWDLEG
Sbjct: 121 CSSILRVVGWDLEG 134

[Close]
BLAST of Csa3G002440 vs. NCBI nr
Match: gi|700200490|gb|KGN55623.1| (hypothetical protein Csa_3G002440 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.5e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 

Query: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60
           MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN
Sbjct: 1   MILLGLELQRRGGDLDSSVELIPFSRSFALLMRSISVPPSSSSFSERIAELELVSKSFMN 60

Query: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120
           PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS
Sbjct: 61  PSTSSSTHFRFWCLDKTCLVDAIWRSSSMEAYKSSSPNKPLQIDLEVEGDEFSNGFNLLS 120

Query: 121 CSSILRVVGWDLEG 135
           CSSILRVVGWDLEG
Sbjct: 121 CSSILRVVGWDLEG 134

The following BLAST results are available for this feature:
BLAST of Csa3G002440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1K1_CUCSA1.7e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G002440 PE=4 SV=1[more]
BLAST of Csa3G002440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200490|gb|KGN55623.1|2.5e-68100.00hypothetical protein Csa_3G002440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G002440.1Csa3G002440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G002440Silver-seed gourdcarcuB0173
Csa3G002440Silver-seed gourdcarcuB0462
Csa3G002440Silver-seed gourdcarcuB0662
Csa3G002440Watermelon (97103) v2cuwmbB178
Csa3G002440Watermelon (97103) v2cuwmbB181
Csa3G002440Wax gourdcuwgoB226
Csa3G002440Wax gourdcuwgoB326
Csa3G002440Cucumber (Chinese Long) v2cucuB119
Csa3G002440Cucumber (Gy14) v1cgycuB024
Csa3G002440Cucumber (Gy14) v1cgycuB458
Csa3G002440Cucurbita maxima (Rimu)cmacuB326
Csa3G002440Cucurbita maxima (Rimu)cmacuB658
Csa3G002440Cucurbita maxima (Rimu)cmacuB827
Csa3G002440Cucurbita maxima (Rimu)cmacuB854
Csa3G002440Cucurbita moschata (Rifu)cmocuB316
Csa3G002440Cucurbita moschata (Rifu)cmocuB646
Csa3G002440Cucurbita moschata (Rifu)cmocuB817
Csa3G002440Cucurbita moschata (Rifu)cmocuB842
Csa3G002440Melon (DHL92) v3.5.1cumeB243
Csa3G002440Melon (DHL92) v3.5.1cumeB262
Csa3G002440Watermelon (Charleston Gray)cuwcgB189
Csa3G002440Watermelon (Charleston Gray)cuwcgB209
Csa3G002440Watermelon (97103) v1cuwmB200
Csa3G002440Watermelon (97103) v1cuwmB261
Csa3G002440Cucurbita pepo (Zucchini)cpecuB069
Csa3G002440Cucurbita pepo (Zucchini)cpecuB212
Csa3G002440Cucurbita pepo (Zucchini)cpecuB484
Csa3G002440Cucurbita pepo (Zucchini)cpecuB555
Csa3G002440Cucurbita pepo (Zucchini)cpecuB851
Csa3G002440Bottle gourd (USVL1VR-Ls)culsiB165
Csa3G002440Bottle gourd (USVL1VR-Ls)culsiB228
Csa3G002440Cucumber (Gy14) v2cgybcuB109
Csa3G002440Cucumber (Gy14) v2cgybcuB266
Csa3G002440Melon (DHL92) v3.6.1cumedB224
Csa3G002440Melon (DHL92) v3.6.1cumedB252