Csa2G380090.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G380090.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 19500355 .. 19501290 (-)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGTCCGACCAACTTTCTCTTCAGTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGGTAAGTTTGTAATAGTGGGTTTGATGATTCTATGTTGTAGTTTCGTTGAGGTATAATGTCGAATTAAATGGTTGATTAATATTGGAAAAATTGCATACGATACCACATTGTTTTAAAATTTTGCAAATATGACAAAATTTCCACTTATAAAAATACTCTCCATCTTAAATTTGTTATTATTCCTAAACTATCTTTCAATAACTTATTTTTTTCCTCTTTTTAATGTCATACTCATTATTTATTTATTCTCCCAATTTTTAAAGTTCTAATTATTTATTTATTTTTATACTAGAAAAATTACTTATTCTTTCTGTCTTAAGCTTGATTTTAGAATATCAATATTATTGCTTTTTAAGGTCCTAATTATTTACTTATTCTTATACTAGAAAAATTGTTTATTCTTTCTATCTTAAGCTTGATTTTAGAATATCAATATTATTGCTTTTTAA

mRNA sequence

ATGCTTCTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGAATATCAATATTATTGCTTTTTAA

Coding sequence (CDS)

ATGCTTCTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGAATATCAATATTATTGCTTTTTAA

Protein sequence

MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIAALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSADREAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF*
Homology
[Close]
BLAST of Csa2G380090.1 vs. TrEMBL
Match: A0A0A0LPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380090 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60
           MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA
Sbjct: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60

Query: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120
           ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD
Sbjct: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120

Query: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 163
           REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF
Sbjct: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 162

[Close]
BLAST of Csa2G380090.1 vs. NCBI nr
Match: gi|700207810|gb|KGN62929.1| (hypothetical protein Csa_2G380090 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60
           MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA
Sbjct: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60

Query: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120
           ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD
Sbjct: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120

Query: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 163
           REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF
Sbjct: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 162

The following BLAST results are available for this feature:
BLAST of Csa2G380090.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPI9_CUCSA1.5e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380090 PE=4 SV=1[more]
BLAST of Csa2G380090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207810|gb|KGN62929.1|2.2e-87100.00hypothetical protein Csa_2G380090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G380090Csa2G380090gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G380090.1Csa2G380090.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G380090.1.cds3Csa2G380090.1.cds3CDS
Csa2G380090.1.cds2Csa2G380090.1.cds2CDS
Csa2G380090.1.cds1Csa2G380090.1.cds1CDS