Csa2G380090 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G380090
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 19500355 .. 19501290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCGTCCGACCAACTTTCTCTTCAGTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGGTAAGTTTGTAATAGTGGGTTTGATGATTCTATGTTGTAGTTTCGTTGAGGTATAATGTCGAATTAAATGGTTGATTAATATTGGAAAAATTGCATACGATACCACATTGTTTTAAAATTTTGCAAATATGACAAAATTTCCACTTATAAAAATACTCTCCATCTTAAATTTGTTATTATTCCTAAACTATCTTTCAATAACTTATTTTTTTCCTCTTTTTAATGTCATACTCATTATTTATTTATTCTCCCAATTTTTAAAGTTCTAATTATTTATTTATTTTTATACTAGAAAAATTACTTATTCTTTCTGTCTTAAGCTTGATTTTAGAATATCAATATTATTGCTTTTTAAGGTCCTAATTATTTACTTATTCTTATACTAGAAAAATTGTTTATTCTTTCTATCTTAAGCTTGATTTTAGAATATCAATATTATTGCTTTTTAA

mRNA sequence

ATGCTTCTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGAATATCAATATTATTGCTTTTTAA

Coding sequence (CDS)

ATGCTTCTTCTTCGGCCGTTCTTCAGCATTCAACGTCCGTCGTTCGGGTCGCGCAAGCCAAGCGTCAAGCCTCACGTCCCGTTCGCACATAAATCTGTCTCATGCAGGACTCCACTTTCGGTTCCATCAAGGTCACAGCCTCCGTCGCGCAGTCTAGATTGGAATCGTTGGTTCATTGCTGCTCTGATCTGCCTCCGTTTGCGAAGCTTCGCTGCCGCCGCACCTGTAGCTGACGTCAGTCAGTCACGCCATCACACTATGCTGTCACGTTTCCTCATCCGACTGACCCAGATCAATTTTCCCTCGCGTCTGACCGCCGCACATCGTGGAGTGCCGCTGCTGCATTCTTTGTCCGCTGACCGTGAAGCAGCCACTGCCTGTTCTTTGTTCCAATCTACGTGCGTCGATTCCACTTTTTCTAAGTTGCAGTTTCTGCCTTACCATGATGACTATTGGGTTTTAGTGAATATCAATATTATTGCTTTTTAA

Protein sequence

MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIAALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSADREAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF*
Homology
[Close]
BLAST of Csa2G380090 vs. TrEMBL
Match: A0A0A0LPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380090 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60
           MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA
Sbjct: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60

Query: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120
           ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD
Sbjct: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120

Query: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 163
           REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF
Sbjct: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 162

[Close]
BLAST of Csa2G380090 vs. NCBI nr
Match: gi|700207810|gb|KGN62929.1| (hypothetical protein Csa_2G380090 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60
           MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA
Sbjct: 1   MLLLRPFFSIQRPSFGSRKPSVKPHVPFAHKSVSCRTPLSVPSRSQPPSRSLDWNRWFIA 60

Query: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120
           ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD
Sbjct: 61  ALICLRLRSFAAAAPVADVSQSRHHTMLSRFLIRLTQINFPSRLTAAHRGVPLLHSLSAD 120

Query: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 163
           REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF
Sbjct: 121 REAATACSLFQSTCVDSTFSKLQFLPYHDDYWVLVNINIIAF 162

The following BLAST results are available for this feature:
BLAST of Csa2G380090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPI9_CUCSA1.5e-87100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380090 PE=4 SV=1[more]
BLAST of Csa2G380090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207810|gb|KGN62929.1|2.2e-87100.00hypothetical protein Csa_2G380090 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101767cucumber EST collection version 3.0transcribed_cluster
CU138656cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G380090.1Csa2G380090.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101767CU101767transcribed_cluster
CU138656CU138656transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G380090CSPI02G23310Wild cucumber (PI 183967)cpicuB065
Csa2G380090Cucsa.162270Cucumber (Gy14) v1cgycuB233
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G380090Silver-seed gourdcarcuB0150
Csa2G380090Silver-seed gourdcarcuB0218
Csa2G380090Silver-seed gourdcarcuB0987
Csa2G380090Watermelon (97103) v2cuwmbB108
Csa2G380090Watermelon (97103) v2cuwmbB158
Csa2G380090Watermelon (97103) v2cuwmbB159
Csa2G380090Watermelon (97103) v2cuwmbB169
Csa2G380090Wax gourdcuwgoB163
Csa2G380090Wax gourdcuwgoB208
Csa2G380090Cucumber (Chinese Long) v2cucuB049
Csa2G380090Cucumber (Chinese Long) v2cucuB085
Csa2G380090Cucumber (Gy14) v1cgycuB100
Csa2G380090Cucurbita maxima (Rimu)cmacuB164
Csa2G380090Cucurbita maxima (Rimu)cmacuB439
Csa2G380090Cucurbita maxima (Rimu)cmacuB792
Csa2G380090Cucurbita moschata (Rifu)cmocuB149
Csa2G380090Cucurbita moschata (Rifu)cmocuB427
Csa2G380090Cucurbita moschata (Rifu)cmocuB785
Csa2G380090Melon (DHL92) v3.5.1cumeB117
Csa2G380090Melon (DHL92) v3.5.1cumeB151
Csa2G380090Watermelon (Charleston Gray)cuwcgB094
Csa2G380090Watermelon (Charleston Gray)cuwcgB101
Csa2G380090Watermelon (Charleston Gray)cuwcgB162
Csa2G380090Watermelon (Charleston Gray)cuwcgB165
Csa2G380090Watermelon (97103) v1cuwmB104
Csa2G380090Watermelon (97103) v1cuwmB107
Csa2G380090Watermelon (97103) v1cuwmB118
Csa2G380090Cucurbita pepo (Zucchini)cpecuB105
Csa2G380090Cucurbita pepo (Zucchini)cpecuB372
Csa2G380090Cucurbita pepo (Zucchini)cpecuB541
Csa2G380090Cucurbita pepo (Zucchini)cpecuB810
Csa2G380090Bottle gourd (USVL1VR-Ls)culsiB137
Csa2G380090Bottle gourd (USVL1VR-Ls)culsiB114
Csa2G380090Bottle gourd (USVL1VR-Ls)culsiB140
Csa2G380090Cucumber (Gy14) v2cgybcuB057
Csa2G380090Cucumber (Gy14) v2cgybcuB060
Csa2G380090Cucumber (Gy14) v2cgybcuB304
Csa2G380090Melon (DHL92) v3.6.1cumedB102
Csa2G380090Melon (DHL92) v3.6.1cumedB114