Csa2G338850.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTAAAAATACTCAAACTTCAAATAATTTGCATTCTCGAATGATGTATTGTGATTTAGACTAGACGGTTCTCTAGAAATACAGTCAGCCGAGCCGCCTAACTTCCGAGAAGAGCAAGCATGGCGTTGTGTATCTCTATTCCTTCCTTCTCCGATTCTGCTACCGCTCCTTCCCTATCTCAAACATATTTCAGTCTCAGTCGCCGCCGGCCTTCCAATTTCATCCACTTTCTTAATTTAAGCCTTCCCAACCGCCCACCACGTCTTTGCCGAGCTTCCAATTCTCAGCCTGGACCGTTCCCCAAACAGTCTGCTTCTGCTTCTTCTAAGAAAAGGAAGAAAAAGGATAAGGGAGATTCCAAGGTTTTTAATCCTACCCATATCGAAGTTGTGGATGATTTTAGCTTCGATGACGCTGGACCCTCTAGCTCCACTTCCAATTCCACTTATTCGTCGTACCATCCTTCGACCTTGCCCAAACCGCCAGCTGGTTTTGTACTAGACGACCATGGAAAGGTCCTCATGGCTTCAAACAAGCGAATTGCTACCATGGTAACATTTCTTTCTCAGTTCCCTCGTGGAGGATTATTTAAAATTTGTATCATTTTAGTGCTTCCCTGTTCACCTAACCACTAGTGCCTTTTGATTTTCATGTATGAACGAGAAGTTCAGTTTACGTTGATAATGAATACATCTGTAATTTATAGGCACTCTCAGTTACTGAATCTAAACTAATCAAACTAAAAGTATGCAGTTAATAAATTTTTCTTATTTACGTTCATCCCGTTTTCCTCTTTACAGCTGGTTTTCTCATTATTCATGGGTTGTTTTATGTATTTGGGTTTGCTAACCTTTGATCAATTCTACTGCCACAAGTGTATGACTGGTTTTTTCATGTATTCAGTTTATTGGTCTAGCTTTCTTTCATAGATATAATGAAAAGATACTGATTCTCGGAAAAATAGAAGAGACGGTCACCAGTGATTTAATACAGTATATAATCTCCAGTTGGAGTATTCTTTCCTGGTTCTTTTCTTGTAATTATACTATCAGATCAACCTCAATTGGGGAATCGCCTTCCCCTAGCCTTAGGGAGTGATTTATTATTATTATGATTATTTTACGAATCCTGCTTGTCCTTATCAAAGAAAGGAAATTATATCATTTACTAAATCCTTTACAATTTTTATTATTGTTACAGCTGTTCTTGTATTTGTGACTTAATTAAATTCTTACTTTTTTTTTCTTTTCTTTTTGATTTTGCATCTTCAATCTTTTAATTTGACAGGTCGATCCTTTGAACAATTTGCCTCTGGAATGCGTTATAAGAAGAATTTTTAGAAGTTCAAAAGGGGATGATTGCATGCTTCTTTGCCCGGTGGACACGTGAGTGTTGTTTGTTGCTACCAGATCATTATGCTATAGCCTCGACACTTCGAAAGTTTGACCTTTTTTTGATATTATTTACCTCAAAATTGCTGCAGGCCTGTTCAAATACTAAAGAGCAAGAATATTGATGGATGGTCAGCTGTATGCTTTCTTTTCATATGGTTAACTTCCTCGCTAGTTTGAGTTTGTTCATGAACTTGAGTGCGGATGGTTTTACAATATTTAATTCACATCACGAAACTTTTATATTTCACATTTCTGTATGCTTATAAGTAAGAAGTTCATGCATGTATTGTTCATTTGTTTGTCCCTTTTACCATATTTGTTCTACTTTTTTTGAAAAGGAAACAAGTCTCTTTATTCTTACAGATGTCATATGAAAGGGACTAATGTTCTAAGTACATGAGGGTTATACAAAAAGCATAAAGCATAACTAGGATCAGTAGGCGCACCTAAACATCTCAACTAGGTTGACACCTCCTTAGTGCCCTCATCGTATCTTTAAAACATAACATCAAAAATTGGCTGAGGCTTAAAAATTCGGCCATTACAGATAGGACAAAAAGACTATTGATCACTAGTCTTACAAAGGATTTAACAAAAAGCATGCAGAAGGCTTGAGACAAAAGTTTAAACCAAAAATTAAGCTGAGAAGATAAAAGCTCTCCAATTTGAGTAGATTTCTTGAATGTTGTAGCTTTCAAAAGCCTTGGAGAAGGAACACCACGAGAAGACATTCTTACGAGTCAAAAAGATGGTTGATCACTAG ATGGCGTTGTGTATCTCTATTCCTTCCTTCTCCGATTCTGCTACCGCTCCTTCCCTATCTCAAACATATTTCAGTCTCAGTCGCCGCCGGCCTTCCAATTTCATCCACTTTCTTAATTTAAGCCTTCCCAACCGCCCACCACGTCTTTGCCGAGCTTCCAATTCTCAGCCTGGACCGTTCCCCAAACAGTCTGCTTCTGCTTCTTCTAAGAAAAGGAAGAAAAAGGATAAGGGAGATTCCAAGGTTTTTAATCCTACCCATATCGAAGTTGTGGATGATTTTAGCTTCGATGACGCTGGACCCTCTAGCTCCACTTCCAATTCCACTTATTCGTCGTACCATCCTTCGACCTTGCCCAAACCGCCAGCTGGTTTTGTACTAGACGACCATGGAAAGGTCCTCATGGCTTCAAACAAGCGAATTGCTACCATGGTCGATCCTTTGAACAATTTGCCTCTGGAATGCGTTATAAGAAGAATTTTTAGAAGTTCAAAAGGGGATGATTGCATGCTTCTTTGCCCGGTGGACACGCCTGTTCAAATACTAAAGAGCAAGAATATTGATGGATGGTCAGCTCTTTCAAAAGCCTTGGAGAAGGAACACCACGAGAAGACATTCTTACGAGTCAAAAAGATGGTTGATCACTAG ATGGCGTTGTGTATCTCTATTCCTTCCTTCTCCGATTCTGCTACCGCTCCTTCCCTATCTCAAACATATTTCAGTCTCAGTCGCCGCCGGCCTTCCAATTTCATCCACTTTCTTAATTTAAGCCTTCCCAACCGCCCACCACGTCTTTGCCGAGCTTCCAATTCTCAGCCTGGACCGTTCCCCAAACAGTCTGCTTCTGCTTCTTCTAAGAAAAGGAAGAAAAAGGATAAGGGAGATTCCAAGGTTTTTAATCCTACCCATATCGAAGTTGTGGATGATTTTAGCTTCGATGACGCTGGACCCTCTAGCTCCACTTCCAATTCCACTTATTCGTCGTACCATCCTTCGACCTTGCCCAAACCGCCAGCTGGTTTTGTACTAGACGACCATGGAAAGGTCCTCATGGCTTCAAACAAGCGAATTGCTACCATGGTCGATCCTTTGAACAATTTGCCTCTGGAATGCGTTATAAGAAGAATTTTTAGAAGTTCAAAAGGGGATGATTGCATGCTTCTTTGCCCGGTGGACACGCCTGTTCAAATACTAAAGAGCAAGAATATTGATGGATGGTCAGCTCTTTCAAAAGCCTTGGAGAAGGAACACCACGAGAAGACATTCTTACGAGTCAAAAAGATGGTTGATCACTAG MALCISIPSFSDSATAPSLSQTYFSLSRRRPSNFIHFLNLSLPNRPPRLCRASNSQPGPFPKQSASASSKKRKKKDKGDSKVFNPTHIEVVDDFSFDDAGPSSSTSNSTYSSYHPSTLPKPPAGFVLDDHGKVLMASNKRIATMVDPLNNLPLECVIRRIFRSSKGDDCMLLCPVDTPVQILKSKNIDGWSALSKALEKEHHEKTFLRVKKMVDH*
BLAST of Csa2G338850.1 vs. TrEMBL
Match: A0A0A0LQF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G338850 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 5.3e-120 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Csa2G338850.1 vs. TrEMBL
Match: M5WG33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008276mg PE=4 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.0e-46 Identity = 106/202 (52.48%), Postives = 135/202 (66.83%), Query Frame = 1
BLAST of Csa2G338850.1 vs. TrEMBL
Match: A0A061DJE6_THECC (BTB/POZ domain-containing protein TNFAIP1 isoform 1 OS=Theobroma cacao GN=TCM_001583 PE=4 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 2.6e-42 Identity = 110/202 (54.46%), Postives = 136/202 (67.33%), Query Frame = 1
BLAST of Csa2G338850.1 vs. TrEMBL
Match: A0A061DKW6_THECC (BTB/POZ domain-containing protein TNFAIP1 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_001583 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 7.5e-42 Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 1
BLAST of Csa2G338850.1 vs. TrEMBL
Match: A0A059AJW1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00111 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 2.2e-41 Identity = 93/166 (56.02%), Postives = 115/166 (69.28%), Query Frame = 1
BLAST of Csa2G338850.1 vs. TAIR10
Match: AT4G33480.1 (AT4G33480.1 unknown protein) HSP 1 Score: 161.4 bits (407), Expect = 6.3e-40 Identity = 97/199 (48.74%), Postives = 124/199 (62.31%), Query Frame = 1
BLAST of Csa2G338850.1 vs. NCBI nr
Match: gi|700207122|gb|KGN62241.1| (hypothetical protein Csa_2G338850 [Cucumis sativus]) HSP 1 Score: 438.3 bits (1126), Expect = 7.6e-120 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Csa2G338850.1 vs. NCBI nr
Match: gi|778670353|ref|XP_011649451.1| (PREDICTED: uncharacterized protein LOC101207357 isoform X1 [Cucumis sativus]) HSP 1 Score: 394.4 bits (1012), Expect = 1.3e-106 Identity = 193/194 (99.48%), Postives = 194/194 (100.00%), Query Frame = 1
BLAST of Csa2G338850.1 vs. NCBI nr
Match: gi|778670355|ref|XP_011649452.1| (PREDICTED: uncharacterized protein LOC101207357 isoform X2 [Cucumis sativus]) HSP 1 Score: 394.4 bits (1012), Expect = 1.3e-106 Identity = 193/194 (99.48%), Postives = 194/194 (100.00%), Query Frame = 1
BLAST of Csa2G338850.1 vs. NCBI nr
Match: gi|659121815|ref|XP_008460828.1| (PREDICTED: uncharacterized protein LOC103499586 [Cucumis melo]) HSP 1 Score: 379.0 bits (972), Expect = 5.4e-102 Identity = 186/194 (95.88%), Postives = 188/194 (96.91%), Query Frame = 1
BLAST of Csa2G338850.1 vs. NCBI nr
Match: gi|595863297|ref|XP_007211558.1| (hypothetical protein PRUPE_ppa008276mg [Prunus persica]) HSP 1 Score: 194.9 bits (494), Expect = 1.5e-46 Identity = 106/202 (52.48%), Postives = 135/202 (66.83%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
|