Csa2G285290.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGCTTAGGAGATAATCCAAAATGGGTTTATTAGCTGTGAACCTCATTTCATCTGCTTCTTGTTTTGTTCCTCACTCGCCGCTGCGTTTCCAAGCAAAAAGAAGTAGCCAACCAGTACTTAAGGCGGCGTTTCAGTCATCAGAGAAGATGGATAGTGGTGGGCAGGTGGCGCCTGTGTCGAAGCTGATGGAGTTTCCACATCTGACGGCTTCGCATAGAGATCTGATGGTGGATCTAATCGAAACCGTTGAGAATGGGTTAGGAGATCATCTTCTTCCATCGACGGTTCCGACAGATGTGGAGTATTATGAGAATCAAAACGGCACTTCACAGGGCACTCTTCTCATTCGTTCTGCTCTTCCATCTTCTCCCGTAAACTCATTTCTCTCTATACCTTCGGAAATTGGCAAAACTAGTTGGTTTTTACTTTTCCCAATTTCCACCTTCTTTTTTTTTGCCATTCAAAAAACTCATTTTTGTTTAACTTACATATACTTCAATTTTTGTTTTCAAAATAACTCATTTTTAAAATTAAACATGTAATCCAAAAATTATTATTGTTTTGGTCCACATAGTTATGAACTTTAACTTCCAATCCTGGATCGACACCATCACTTTGGCACTTCGTTTGATTCCGAAAGTTTGTGGGTTCACTGCTGAAAATATAATTTTATGCTCTATTAACTTCTTGTGTGTTGTTGCTACTAGGTACATAAGTATACAAGTAGTAGTAATTAAGTTATGAACTTTAGTGTATGTGCCTTGCTTAAGGACTCTAGAAATAGGAGTATGAGAAAGTAGTCATGTAGTCTCTGTATGGTCTAAGAAGTTGGAGTTTAGGGGATTACAGAGTCTTTTTTTTTCTAATTCATTGGTTCAAACACCACCTTGAGTATGGAATCGGAAAAGCAAACTTTGTTATGCTTGCCCAATTGGTGTCTTTGCCAATAGTCAAAATGGCATCATGAATGTTTTTTTTTTTTTTTTTTTATGAATTTTGATATGGAGAAATATAAATGTTAAGATCATTTTAAATTAGGTTCACCTAAGTAAAAAAAAATAAAAAAAAATTAATGATATATGCACCATTAGACAATTTTTAATTGGGTGAGTTTCCATTTCGTTATTCCATTTTTAGAGTGTAAGAAAAAAATTACAACAGTAGAGTAGAGGATTCAAAATTTATGAGTTGTGTTCTTTTTCTTTCTTATGTAAGTTTACAATATGATCAACTCTTTTATTCAACTTGAAAACAACTCATATAAAGTTTAGAATTTGGTTATTGAAGTTTCATTTGATTATTTCATTTTTTTCAGATTGATTTTATGATAGCAAGTTGGTTGCACTTGAAGCAGCCACAAGGTGGTGCATTCAACATAACCAACATTGCTGGCTACTTGAAACCCTCAAATGACATTCCTCATTTTCAATTCGAGTTGGTTCAATGTAGCCCTACCTTTCTCATCTTCTTTCTTGACTTGCTTCCTCGAACCGATATCATCCTCCGCCCCGACTACCTTACCACCTACTACGAGGACACTGGGCTCGAGAAGCTTCGACAACGACTTGCCGCCTTGCCAGAAGTAAGCCCTTACTTCTCGTCGTCGCTCTACTTTCGTAAAGTCGTTTCGTCTACGGGAATTCTGGTGGGTGTGAAGTGCCAGGAGAGCGAGTCCAAGCGAGTGGAAGAGATTATTCAGGAGGAGATCGGTCCAATCTCGAAGGAGGTAATGAGGATATGGATGGAGTTGTGCTTGAATAATGGAGGAAGAGAGCTTGAAGAAGATGAAAGGAGTTTGATGGAGAAGAGAGATCTTATGATAAAGAAGAAGGCGATTGAGATGGATTTGAGCAAAACCATGCCTTTGCAATTTGGAGAAGAAGTTGCAAATAGAGTTCTTCAAGTTATTAGAAGTGCTTTCAAAACTGCTTAATGTTTGATTATCTTCAAGTTATGTACCTACTTTGTTTTGACACCATCTTTTCAGCACGAGTATCTAGTACACACTATCAGTACAAAACTTCTTAGTTACAATAGATTATATATGATGAGTTCATATTGACATAATTTGATCAATAATATCACAAATAATCGAAGAATTTACAAAGCAATATATAGAAAACTCAACTTACATAACATGAAATAAAATATACATAAAATTTCAAATCAAGAAGCTACCTAAAAGAAATAAGGATAGTGGCGATGGTACCGATTTGTCGATGAGAGAAAGAAGCGAGACGAAGAACAGT ATGGGTTTATTAGCTGTGAACCTCATTTCATCTGCTTCTTGTTTTGTTCCTCACTCGCCGCTGCGTTTCCAAGCAAAAAGAAGTAGCCAACCAGTACTTAAGGCGGCGTTTCAGTCATCAGAGAAGATGGATAGTGGTGGGCAGGTGGCGCCTGTGTCGAAGCTGATGGAGTTTCCACATCTGACGGCTTCGCATAGAGATCTGATGGTGGATCTAATCGAAACCGTTGAGAATGGGTTAGGAGATCATCTTCTTCCATCGACGGTTCCGACAGATGTGGAGTATTATGAGAATCAAAACGGCACTTCACAGGGCACTCTTCTCATTCGTTCTGCTCTTCCATCTTCTCCCATTGATTTTATGATAGCAAGTTGGTTGCACTTGAAGCAGCCACAAGGTGGTGCATTCAACATAACCAACATTGCTGGCTACTTGAAACCCTCAAATGACATTCCTCATTTTCAATTCGAGTTGGTTCAATGTAGCCCTACCTTTCTCATCTTCTTTCTTGACTTGCTTCCTCGAACCGATATCATCCTCCGCCCCGACTACCTTACCACCTACTACGAGGACACTGGGCTCGAGAAGCTTCGACAACGACTTGCCGCCTTGCCAGAAGTAAGCCCTTACTTCTCGTCGTCGCTCTACTTTCGTAAAGTCGTTTCGTCTACGGGAATTCTGGTGGGTGTGAAGTGCCAGGAGAGCGAGTCCAAGCGAGTGGAAGAGATTATTCAGGAGGAGATCGGTCCAATCTCGAAGGAGGTAATGAGGATATGGATGGAGTTGTGCTTGAATAATGGAGGAAGAGAGCTTGAAGAAGATGAAAGGAGTTTGATGGAGAAGAGAGATCTTATGATAAAGAAGAAGGCGATTGAGATGGATTTGAGCAAAACCATGCCTTTGCAATTTGGAGAAGAAGTTGCAAATAGAGTTCTTCAAGTTATTAGAAGTGCTTTCAAAACTGCTTAA ATGGGTTTATTAGCTGTGAACCTCATTTCATCTGCTTCTTGTTTTGTTCCTCACTCGCCGCTGCGTTTCCAAGCAAAAAGAAGTAGCCAACCAGTACTTAAGGCGGCGTTTCAGTCATCAGAGAAGATGGATAGTGGTGGGCAGGTGGCGCCTGTGTCGAAGCTGATGGAGTTTCCACATCTGACGGCTTCGCATAGAGATCTGATGGTGGATCTAATCGAAACCGTTGAGAATGGGTTAGGAGATCATCTTCTTCCATCGACGGTTCCGACAGATGTGGAGTATTATGAGAATCAAAACGGCACTTCACAGGGCACTCTTCTCATTCGTTCTGCTCTTCCATCTTCTCCCATTGATTTTATGATAGCAAGTTGGTTGCACTTGAAGCAGCCACAAGGTGGTGCATTCAACATAACCAACATTGCTGGCTACTTGAAACCCTCAAATGACATTCCTCATTTTCAATTCGAGTTGGTTCAATGTAGCCCTACCTTTCTCATCTTCTTTCTTGACTTGCTTCCTCGAACCGATATCATCCTCCGCCCCGACTACCTTACCACCTACTACGAGGACACTGGGCTCGAGAAGCTTCGACAACGACTTGCCGCCTTGCCAGAAGTAAGCCCTTACTTCTCGTCGTCGCTCTACTTTCGTAAAGTCGTTTCGTCTACGGGAATTCTGGTGGGTGTGAAGTGCCAGGAGAGCGAGTCCAAGCGAGTGGAAGAGATTATTCAGGAGGAGATCGGTCCAATCTCGAAGGAGGTAATGAGGATATGGATGGAGTTGTGCTTGAATAATGGAGGAAGAGAGCTTGAAGAAGATGAAAGGAGTTTGATGGAGAAGAGAGATCTTATGATAAAGAAGAAGGCGATTGAGATGGATTTGAGCAAAACCATGCCTTTGCAATTTGGAGAAGAAGTTGCAAATAGAGTTCTTCAAGTTATTAGAAGTGCTTTCAAAACTGCTTAA MGLLAVNLISSASCFVPHSPLRFQAKRSSQPVLKAAFQSSEKMDSGGQVAPVSKLMEFPHLTASHRDLMVDLIETVENGLGDHLLPSTVPTDVEYYENQNGTSQGTLLIRSALPSSPIDFMIASWLHLKQPQGGAFNITNIAGYLKPSNDIPHFQFELVQCSPTFLIFFLDLLPRTDIILRPDYLTTYYEDTGLEKLRQRLAALPEVSPYFSSSLYFRKVVSSTGILVGVKCQESESKRVEEIIQEEIGPISKEVMRIWMELCLNNGGRELEEDERSLMEKRDLMIKKKAIEMDLSKTMPLQFGEEVANRVLQVIRSAFKTA*
BLAST of Csa2G285290.1 vs. Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2) HSP 1 Score: 243.4 bits (620), Expect = 3.3e-63 Identity = 133/322 (41.30%), Postives = 195/322 (60.56%), Query Frame = 1
BLAST of Csa2G285290.1 vs. Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 2.3e-40 Identity = 82/202 (40.59%), Postives = 122/202 (60.40%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TrEMBL
Match: A0A0A0LLX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285290 PE=4 SV=1) HSP 1 Score: 636.0 bits (1639), Expect = 2.6e-179 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TrEMBL
Match: Q1ELT6_CITLA (Red chlorophyll catabolite reductase (Fragment) OS=Citrullus lanatus GN=rccr PE=2 SV=1) HSP 1 Score: 539.3 bits (1388), Expect = 3.3e-150 Identity = 274/315 (86.98%), Postives = 294/315 (93.33%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TrEMBL
Match: C6L812_CUCSA (Putative red chlorophyll catabolite reductase (Fragment) OS=Cucumis sativus GN=CsRCCR PE=2 SV=1) HSP 1 Score: 416.4 bits (1069), Expect = 3.2e-113 Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TrEMBL
Match: B9HH31_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11040g PE=4 SV=2) HSP 1 Score: 325.1 bits (832), Expect = 9.7e-86 Identity = 167/306 (54.58%), Postives = 219/306 (71.57%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TrEMBL
Match: V4SF05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026248mg PE=4 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 6.3e-85 Identity = 163/268 (60.82%), Postives = 201/268 (75.00%), Query Frame = 1
BLAST of Csa2G285290.1 vs. TAIR10
Match: AT4G37000.1 (AT4G37000.1 accelerated cell death 2 (ACD2)) HSP 1 Score: 243.4 bits (620), Expect = 1.9e-64 Identity = 133/322 (41.30%), Postives = 195/322 (60.56%), Query Frame = 1
BLAST of Csa2G285290.1 vs. NCBI nr
Match: gi|449460580|ref|XP_004148023.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis sativus]) HSP 1 Score: 636.0 bits (1639), Expect = 3.7e-179 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1
BLAST of Csa2G285290.1 vs. NCBI nr
Match: gi|659116003|ref|XP_008457850.1| (PREDICTED: red chlorophyll catabolite reductase-like [Cucumis melo]) HSP 1 Score: 579.3 bits (1492), Expect = 4.1e-162 Identity = 296/325 (91.08%), Postives = 309/325 (95.08%), Query Frame = 1
BLAST of Csa2G285290.1 vs. NCBI nr
Match: gi|106880172|emb|CAJ80768.1| (red chlorophyll catabolite reductase [Citrullus lanatus]) HSP 1 Score: 539.3 bits (1388), Expect = 4.7e-150 Identity = 274/315 (86.98%), Postives = 294/315 (93.33%), Query Frame = 1
BLAST of Csa2G285290.1 vs. NCBI nr
Match: gi|253787599|dbj|BAH84859.1| (putative red chlorophyll catabolite reductase, partial [Cucumis sativus]) HSP 1 Score: 416.4 bits (1069), Expect = 4.6e-113 Identity = 208/209 (99.52%), Postives = 208/209 (99.52%), Query Frame = 1
BLAST of Csa2G285290.1 vs. NCBI nr
Match: gi|566180698|ref|XP_002310112.2| (hypothetical protein POPTR_0007s11040g [Populus trichocarpa]) HSP 1 Score: 325.1 bits (832), Expect = 1.4e-85 Identity = 167/306 (54.58%), Postives = 219/306 (71.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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