Csa2G234540.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G234540.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 11403092 .. 11403430 (+)
Sequence length339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

mRNA sequence

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Coding sequence (CDS)

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Protein sequence

MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQSNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY*
Homology
[Close]
BLAST of Csa2G234540.1 vs. TrEMBL
Match: A0A0A0LLT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234540 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

[Close]
BLAST of Csa2G234540.1 vs. NCBI nr
Match: gi|700206608|gb|KGN61727.1| (hypothetical protein Csa_2G234540 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 7.3e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 

Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

The following BLAST results are available for this feature:
BLAST of Csa2G234540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLT2_CUCSA5.1e-58100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234540 PE=4 SV=1[more]
BLAST of Csa2G234540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206608|gb|KGN61727.1|7.3e-58100.00hypothetical protein Csa_2G234540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G234540Csa2G234540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G234540.1Csa2G234540.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G234540.1.cds1Csa2G234540.1.cds1CDS