Csa2G234540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G234540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 11403092 .. 11403430 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

mRNA sequence

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Coding sequence (CDS)

ATGACTAACACTCCCCACCTCTCATTCGTCCAGCCGACACCAGTACCTCTGAGTGTGGTGCGTTGCTTGAAACGTCGGATGACGACCACCCTACGCTGCCCCTTTCGCGAATTACCCATATCTAAAGTTGGGTTTCCTTTGTGTCGTTCTGTTCGAGTTCCTGAACGATTTGGTCGCCAGTCGAATTCTCCATCACCCAGTCATACTTCGTCACTATTTCGGAACCCATCACCATTAGCTTTGCTCCTTTCTAATCACCATTTCACCTCGAATAGTAGATTAGAGGTAAGTTTCATTGTTTTAGTTGGCTTTTATTTTAGATTTTCGAATACTTATTGA

Protein sequence

MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQSNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY*

Homology

[Close]

BLAST of Csa2G234540 vs. TrEMBL
Match: A0A0A0LLT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234540 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

[Close]

BLAST of Csa2G234540 vs. NCBI nr
Match: gi|700206608|gb|KGN61727.1| (hypothetical protein Csa_2G234540 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 7.3e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60
           MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ
Sbjct: 1   MTNTPHLSFVQPTPVPLSVVRCLKRRMTTTLRCPFRELPISKVGFPLCRSVRVPERFGRQ 60

Query: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 113
           SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY
Sbjct: 61  SNSPSPSHTSSLFRNPSPLALLLSNHHFTSNSRLEVSFIVLVGFYFRFSNTY 112

The following BLAST results are available for this feature:

BLAST of Csa2G234540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLT2_CUCSA	5.1e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234540 PE=4 SV=1	[more]

BLAST of Csa2G234540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206608\|gb\|KGN61727.1\|	7.3e-58	100.00	hypothetical protein Csa_2G234540 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU093572	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G234540.1	Csa2G234540.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU093572	CU093572	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G234540	CsGy2G011600	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G234540	Wax gourd	cuwgoB181
Csa2G234540	Cucumber (Gy14) v1	cgycuB086
Csa2G234540	Cucurbita maxima (Rimu)	cmacuB542
Csa2G234540	Cucurbita maxima (Rimu)	cmacuB588
Csa2G234540	Cucurbita moschata (Rifu)	cmocuB531
Csa2G234540	Cucurbita moschata (Rifu)	cmocuB577
Csa2G234540	Melon (DHL92) v3.5.1	cumeB085
Csa2G234540	Watermelon (Charleston Gray)	cuwcgB091
Csa2G234540	Watermelon (97103) v1	cuwmB101
Csa2G234540	Cucurbita pepo (Zucchini)	cpecuB267
Csa2G234540	Cucurbita pepo (Zucchini)	cpecuB704
Csa2G234540	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G234540	Melon (DHL92) v3.6.1	cumedB091
Csa2G234540	Silver-seed gourd	carcuB0812
Csa2G234540	Silver-seed gourd	carcuB1068
Csa2G234540	Watermelon (97103) v2	cuwmbB166