Csa2G108630.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G108630.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 7672756 .. 7672971 (+)
Sequence length216
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

mRNA sequence

ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

Coding sequence (CDS)

ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

Protein sequence

MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLTLRPGILPPAKI*
Homology
[Close]
BLAST of Csa2G108630.1 vs. TrEMBL
Match: A0A0A0LHH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108630 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.7e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60
          MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT
Sbjct: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60

Query: 61 LRPGILPPAKI 72
          LRPGILPPAKI
Sbjct: 61 LRPGILPPAKI 71

[Close]
BLAST of Csa2G108630.1 vs. NCBI nr
Match: gi|700206266|gb|KGN61385.1| (hypothetical protein Csa_2G108630 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60
          MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT
Sbjct: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60

Query: 61 LRPGILPPAKI 72
          LRPGILPPAKI
Sbjct: 61 LRPGILPPAKI 71

The following BLAST results are available for this feature:
BLAST of Csa2G108630.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHH6_CUCSA4.7e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108630 PE=4 SV=1[more]
BLAST of Csa2G108630.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206266|gb|KGN61385.1|6.8e-33100.00hypothetical protein Csa_2G108630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G108630Csa2G108630gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G108630.1Csa2G108630.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G108630.1.cds1Csa2G108630.1.cds1CDS