Csa2G108630 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G108630
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 7672756 .. 7672971 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

mRNA sequence

ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

Coding sequence (CDS)

ATGGGATTCTCTCTCACCAGTGTCACACAAGTTACCTTCGGATATCCAACAATGTTTTGCTACATTCACATTCTTAATCTAGGAGTTACACTCCACCAACATCTCATCGTCATATTTTCAAGCTTTCCACAGCGAGCGCTACAACGTCATACGCTGGAATTATCTCACAACAACTTAACTCTGAGACCTGGGATTCTTCCTCCTGCCAAGATCTGA

Protein sequence

MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLTLRPGILPPAKI*

Homology

[Close]

BLAST of Csa2G108630 vs. TrEMBL
Match: A0A0A0LHH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108630 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.7e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60
          MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT
Sbjct: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60

Query: 61 LRPGILPPAKI 72
          LRPGILPPAKI
Sbjct: 61 LRPGILPPAKI 71

[Close]

BLAST of Csa2G108630 vs. NCBI nr
Match: gi|700206266|gb|KGN61385.1| (hypothetical protein Csa_2G108630 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 6.8e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60
          MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT
Sbjct: 1  MGFSLTSVTQVTFGYPTMFCYIHILNLGVTLHQHLIVIFSSFPQRALQRHTLELSHNNLT 60

Query: 61 LRPGILPPAKI 72
          LRPGILPPAKI
Sbjct: 61 LRPGILPPAKI 71

The following BLAST results are available for this feature:

BLAST of Csa2G108630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHH6_CUCSA	4.7e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G108630 PE=4 SV=1	[more]

BLAST of Csa2G108630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206266\|gb\|KGN61385.1\|	6.8e-33	100.00	hypothetical protein Csa_2G108630 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G108630.1	Csa2G108630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G108630	Cucumber (Gy14) v2	cgybcuB056
Csa2G108630	Melon (DHL92) v3.6.1	cumedB135
Csa2G108630	Wax gourd	cuwgoB140
Csa2G108630	Cucumber (Gy14) v1	cgycuB382
Csa2G108630	Cucurbita maxima (Rimu)	cmacuB793
Csa2G108630	Cucurbita moschata (Rifu)	cmocuB779
Csa2G108630	Melon (DHL92) v3.5.1	cumeB132
Csa2G108630	Watermelon (97103) v1	cuwmB158
Csa2G108630	Cucurbita pepo (Zucchini)	cpecuB107
Csa2G108630	Bottle gourd (USVL1VR-Ls)	culsiB098