Csa2G021710.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G021710.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTir-nbs-lrr resistance protein; contains IPR000157 (Toll/interleukin-1 receptor homology (TIR) domain)
LocationChr2 : 2669560 .. 2670182 (+)
Sequence length264
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGAAAATGGGAGTGGTAGAGAAAAGTCTTTGGATGAAATTGGATAGGTTGTGTAGTACTGTATCAATCAAATTCAAAATACGATGCCCCACTTCTTCAATGCGTTTGATTTTCTCTCTTTATCTAATACATTGTTCTTCAATTTCTGCTCTGCATTATTCTTCATAAGTATTGCTATTGGTGTTTTCGATTTTTCTTTTCCTTATTCTGCGCGTTTCTTTCTGATGGATTCTTCCACTGTTGCAGCAGAATCATCTACTTTCAAATGGAGCTATGATGTGTGTTTGAGTTTCAGAGGAGAGGATACTCGAGACAATTTCACCAGTCATCTTGACATGGCCTTGCGTCAAAAGGGTGTCAACGTCTTCATTGACGACCAGCTCGAAAGGGGTGAGCAAATTTCTGAAACCCTTTTCAAATCTATACACAAAACTTCCATTTCTATTGTTATATTCTCTGAAAATTATGCATCTTCGACATGGTGTCTGGATGAATTGGTGGAAATAATTGAATGTAAGAAATCCAAGGGTCAGGAAGTTTTGCCGATTTTCTACAAGGTGGATCCTTCGGATGTACGAAAACAAACTGGTTGGTTTGGAGGAGCATTGGCCAAACATGA

mRNA sequence

ATGTGGGAAAATGGGAGTGCAGAATCATCTACTTTCAAATGGAGCTATGATGTGTGTTTGAGTTTCAGAGGAGAGGATACTCGAGACAATTTCACCAGTCATCTTGACATGGCCTTGCGTCAAAAGGGTGTCAACGTCTTCATTGACGACCAGCTCGAAAGGGAAATCCAAGGGTCAGGAAGTTTTGCCGATTTTCTACAAGGTGGATCCTTCGGATGTACGAAAACAAACTGGTTGGTTTGGAGGAGCATTGGCCAAACATGA

Coding sequence (CDS)

ATGTGGGAAAATGGGAGTGCAGAATCATCTACTTTCAAATGGAGCTATGATGTGTGTTTGAGTTTCAGAGGAGAGGATACTCGAGACAATTTCACCAGTCATCTTGACATGGCCTTGCGTCAAAAGGGTGTCAACGTCTTCATTGACGACCAGCTCGAAAGGGAAATCCAAGGGTCAGGAAGTTTTGCCGATTTTCTACAAGGTGGATCCTTCGGATGTACGAAAACAAACTGGTTGGTTTGGAGGAGCATTGGCCAAACATGA

Protein sequence

MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSGSFADFLQGGSFGCTKTNWLVWRSIGQT*
Homology
[Close]
BLAST of Csa2G021710.1 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQ 52
          ++ SS+ +WSYDV LSFRGEDTR  FTSHL   L  KG+  F DD+
Sbjct: 2  ASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDK 47

[Close]
BLAST of Csa2G021710.1 vs. Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 25/48 (52.08%), Postives = 28/48 (58.33%), Query Frame = 1 

Query: 7  AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          A SS+  W YDV  SFRGED R+NF SHL      KG+  F DD ++R
Sbjct: 2  ASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKR 49

[Close]
BLAST of Csa2G021710.1 vs. TrEMBL
Match: A0A0A0LFS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021710 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG 60
          MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG
Sbjct: 1  MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG 60

Query: 61 SFADFLQGGSFGCTKTNWLVWRSIGQT 88
          SFADFLQGGSFGCTKTNWLVWRSIGQT
Sbjct: 61 SFADFLQGGSFGCTKTNWLVWRSIGQT 87

[Close]
BLAST of Csa2G021710.1 vs. TrEMBL
Match: E7CHD1_CUCSA (Putative TIR-NBS class protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          +AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER
Sbjct: 7  AAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55

[Close]
BLAST of Csa2G021710.1 vs. TrEMBL
Match: E5GB34_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 1 

Query: 4  NGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSGSFA 63
          + S ESSTFKWSYDV LSFRGEDTR NFTSHLDMALRQKGVNVFIDD+LER  Q S S  
Sbjct: 2  DSSTESSTFKWSYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLF 61

Query: 64 DFLQ 68
            +Q
Sbjct: 62 KSIQ 65

[Close]
BLAST of Csa2G021710.1 vs. TrEMBL
Match: E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSGSFADF 65
          + ES TFKW+YDV LSFRGEDTR NFTSHLDMALRQKGVNVFI+D+LER  Q S S    
Sbjct: 7  ATESPTFKWTYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFINDKLERGEQISESLFKS 66

Query: 66 LQGGS 71
          +Q  S
Sbjct: 67 IQEAS 71

[Close]
BLAST of Csa2G021710.1 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 6   SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSGSFADF 65
           + ES TFKW+YDV LSFRGEDTR NFTSHLDMALRQKGVNVFID++LER  Q S S    
Sbjct: 37  ATESPTFKWTYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDNKLERGEQISESLFKS 96

Query: 66  LQGGS 71
           +Q  S
Sbjct: 97  IQEAS 101

[Close]
BLAST of Csa2G021710.1 vs. TAIR10
Match: AT4G12010.1 (AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1 

Query: 9  SSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          SS     +DV LSFRG DTR+NFT HL  ALR +G++ FIDD+L R
Sbjct: 4  SSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRR 49

[Close]
BLAST of Csa2G021710.1 vs. TAIR10
Match: AT5G51630.1 (AT5G51630.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 53.9 bits (128), Expect = 5.8e-08
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 1 

Query: 7  AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          A SS+  W+YDV  SF GED R +F SHL   L +K +N FID+ +ER
Sbjct: 2  ASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIER 49

[Close]
BLAST of Csa2G021710.1 vs. TAIR10
Match: AT4G11170.1 (AT4G11170.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 25/48 (52.08%), Postives = 28/48 (58.33%), Query Frame = 1 

Query: 7  AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          A SS+  W YDV  SFRGED R+NF SHL      KG+  F DD ++R
Sbjct: 2  ASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKR 49

[Close]
BLAST of Csa2G021710.1 vs. TAIR10
Match: AT1G72860.1 (AT1G72860.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 52.0 bits (123), Expect = 2.2e-07
Identity = 26/46 (56.52%), Postives = 28/46 (60.87%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQ 52
          ++ SS+  W YDV LSFRGEDTR N  SHL   L  KGV  F DD+
Sbjct: 2  ASSSSSPIWKYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDK 47

[Close]
BLAST of Csa2G021710.1 vs. TAIR10
Match: AT4G19530.1 (AT4G19530.1 disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          S+  S+    + V L+FRG++ R+NF SHLD ALR K +NVFID+ +E+
Sbjct: 5  SSVVSSVPQQHQVFLNFRGDELRNNFVSHLDKALRGKQINVFIDEAVEK 53

[Close]
BLAST of Csa2G021710.1 vs. NCBI nr
Match: gi|700205781|gb|KGN60900.1| (hypothetical protein Csa_2G021710 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 

Query: 1  MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG 60
          MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG
Sbjct: 1  MWENGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSG 60

Query: 61 SFADFLQGGSFGCTKTNWLVWRSIGQT 88
          SFADFLQGGSFGCTKTNWLVWRSIGQT
Sbjct: 61 SFADFLQGGSFGCTKTNWLVWRSIGQT 87

[Close]
BLAST of Csa2G021710.1 vs. NCBI nr
Match: gi|778666793|ref|XP_004139181.2| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          +AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER
Sbjct: 7  AAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55

[Close]
BLAST of Csa2G021710.1 vs. NCBI nr
Match: gi|315507081|gb|ADU33176.1| (putative TIR-NBS class protein [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 

Query: 6  SAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          +AESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER
Sbjct: 7  AAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55

[Close]
BLAST of Csa2G021710.1 vs. NCBI nr
Match: gi|778666797|ref|XP_011648811.1| (PREDICTED: toll/interleukin-1 receptor-like protein isoform X2 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 

Query: 8  ESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 55
          ESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER
Sbjct: 3  ESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLER 49

[Close]
BLAST of Csa2G021710.1 vs. NCBI nr
Match: gi|659070337|ref|XP_008454622.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 1 

Query: 4  NGSAESSTFKWSYDVCLSFRGEDTRDNFTSHLDMALRQKGVNVFIDDQLEREIQGSGSFA 63
          + S ESSTFKWSYDV LSFRGEDTR NFTSHLDMALRQKGVNVFIDD+LER  Q S S  
Sbjct: 27 DSSTESSTFKWSYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLF 86

Query: 64 DFLQ 68
            +Q
Sbjct: 87 KSIQ 90

The following BLAST results are available for this feature:
BLAST of Csa2G021710.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TMVRN_NICGU2.4e-0858.70TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1[more]
Y4117_ARATH2.3e-0652.08Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g111... [more]
BLAST of Csa2G021710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFS0_CUCSA1.1e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021710 PE=4 SV=1[more]
E7CHD1_CUCSA2.1e-1997.96Putative TIR-NBS class protein OS=Cucumis sativus PE=4 SV=1[more]
E5GB34_CUCME2.6e-1776.56TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E7CHD3_CUCSA1.4e-1570.77Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1[more]
D9I8I4_CUCSA1.4e-1570.77TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1[more]
BLAST of Csa2G021710.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G12010.11.5e-0858.70 Disease resistance protein (TIR-NBS-LRR class) family[more]
AT5G51630.15.8e-0852.08 Disease resistance protein (TIR-NBS-LRR class) family[more]
AT4G11170.11.3e-0752.08 Disease resistance protein (TIR-NBS-LRR class) family[more]
AT1G72860.12.2e-0756.52 Disease resistance protein (TIR-NBS-LRR class) family[more]
AT4G19530.12.9e-0748.98 disease resistance protein (TIR-NBS-LRR class) family[more]
BLAST of Csa2G021710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205781|gb|KGN60900.1|1.6e-44100.00hypothetical protein Csa_2G021710 [Cucumis sativus][more]
gi|778666793|ref|XP_004139181.2|3.1e-1997.96PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus][more]
gi|315507081|gb|ADU33176.1|3.1e-1997.96putative TIR-NBS class protein [Cucumis sativus][more]
gi|778666797|ref|XP_011648811.1|1.2e-18100.00PREDICTED: toll/interleukin-1 receptor-like protein isoform X2 [Cucumis sativus][more]
gi|659070337|ref|XP_008454622.1|3.7e-1776.56PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0043531 ADP binding
molecular_function GO:0005524 ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G021710Csa2G021710gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G021710.1Csa2G021710.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G021710.1.cds1Csa2G021710.1.cds1CDS
Csa2G021710.1.cds2Csa2G021710.1.cds2CDS
Csa2G021710.1.cds3Csa2G021710.1.cds3CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000157Toll/interleukin-1 receptor homology (TIR) domainGENE3DG3DSA:3.40.50.10140coord: 14..51
score: 5.
IPR000157Toll/interleukin-1 receptor homology (TIR) domainPFAMPF01582TIRcoord: 16..51
score: 2.
IPR000157Toll/interleukin-1 receptor homology (TIR) domainunknownSSF52200Toll/Interleukin receptor TIR domaincoord: 7..64
score: 2.88
NoneNo IPR availablePANTHERPTHR11017LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 6..54
score: 5.1