Csa2G021660.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G021660.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 2635249 .. 2636071 (+)
Sequence length381
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGTAAACACCCTTTCTCCCTCTTTCTATTTGGTTCTCAGTTTCTTTTAATGACTTCTACTCTTTTTTTCGTCTATAATTTAAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTATCTTGATGTTTTGGTATCTTACATCCCTACGAATCAAATGGGAGAATCTAAATGCTGAAAATCTATCTTAACTACCAGGAAACAATCTTACATCCCTACAAATCAAATGGGAGAATCCAATTGCTGAAATCTATCTTAGACTACCAGGAAGCAAAATAACTTGTTGAAGGTAACTTATATGAAAATAATAATAATAATAATAATAAATAAAATTTGAAAACAGGACCAAAATGATGCTTCTAGCTAATTGTTAGCCCCCATAATTTTTAGATTGTTTGTAGCCCTCATATATATATTTGGTTCCCTGGCCTCTGTCCCTTGTTTTTAGCAAATTGTCAGCTGCCATAATTTTTAGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

mRNA sequence

ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

Coding sequence (CDS)

ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

Protein sequence

MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKIPLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMDEFTIVI*
Homology
[Close]
BLAST of Csa2G021660.1 vs. TrEMBL
Match: A0A0A0LFR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021660 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60
           MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI
Sbjct: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60

Query: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120
           PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD
Sbjct: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120

Query: 121 EFTIVI 127
           EFTIVI
Sbjct: 121 EFTIVI 126

[Close]
BLAST of Csa2G021660.1 vs. NCBI nr
Match: gi|700205776|gb|KGN60895.1| (hypothetical protein Csa_2G021660 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.5e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60
           MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI
Sbjct: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60

Query: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120
           PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD
Sbjct: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120

Query: 121 EFTIVI 127
           EFTIVI
Sbjct: 121 EFTIVI 126

[Close]
BLAST of Csa2G021660.1 vs. NCBI nr
Match: gi|778666768|ref|XP_011648805.1| (PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 

Query: 1  MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK 32
          MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK
Sbjct: 1  MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK 31

The following BLAST results are available for this feature:
BLAST of Csa2G021660.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFR5_CUCSA3.1e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021660 PE=4 SV=1[more]
BLAST of Csa2G021660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205776|gb|KGN60895.1|4.5e-64100.00hypothetical protein Csa_2G021660 [Cucumis sativus][more]
gi|778666768|ref|XP_011648805.1|3.3e-06100.00PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G021660Csa2G021660gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G021660.1Csa2G021660.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G021660.1.cds1Csa2G021660.1.cds1CDS
Csa2G021660.1.cds2Csa2G021660.1.cds2CDS
Csa2G021660.1.cds3Csa2G021660.1.cds3CDS