Csa2G021660 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G021660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 2635249 .. 2636071 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGTAAACACCCTTTCTCCCTCTTTCTATTTGGTTCTCAGTTTCTTTTAATGACTTCTACTCTTTTTTTCGTCTATAATTTAAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTATCTTGATGTTTTGGTATCTTACATCCCTACGAATCAAATGGGAGAATCTAAATGCTGAAAATCTATCTTAACTACCAGGAAACAATCTTACATCCCTACAAATCAAATGGGAGAATCCAATTGCTGAAATCTATCTTAGACTACCAGGAAGCAAAATAACTTGTTGAAGGTAACTTATATGAAAATAATAATAATAATAATAATAAATAAAATTTGAAAACAGGACCAAAATGATGCTTCTAGCTAATTGTTAGCCCCCATAATTTTTAGATTGTTTGTAGCCCTCATATATATATTTGGTTCCCTGGCCTCTGTCCCTTGTTTTTAGCAAATTGTCAGCTGCCATAATTTTTAGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

mRNA sequence

ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

Coding sequence (CDS)

ATGCCTTCTTCTTCTTCTTCTTCTTCTACTCTCTTTTCTGTCTTTAGGGTTTTCGTCATTGCTCTCCTCTTCTTCTCTCCTGTTCTCTCTAAAGGGCATCTAAAATTGGTTAGATGCTATTGTATGAACATGATCCTAAGATGTCGATATCTTGAAGTGTTTCCAAAATCGGTTAAGATTCCACTATATGAGCAACTTAAGATGTCGGTTCTTAGCACCCCACCCAGTACATATTTGGTTACGAGACCACTATTCCTTGTTCTCTTCCACGATGGGAAGCCACTTGGGGCTGCTTGGGTTGTAATGGGATGGGCTCTTAATGTAGAGCTATTAAGGGGTGTTCGGTCATCCGAGATGGATGAGTTTACAATAGTAATATAA

Protein sequence

MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKIPLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMDEFTIVI*
Homology
[Close]
BLAST of Csa2G021660 vs. TrEMBL
Match: A0A0A0LFR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021660 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.1e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60
           MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI
Sbjct: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60

Query: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120
           PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD
Sbjct: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120

Query: 121 EFTIVI 127
           EFTIVI
Sbjct: 121 EFTIVI 126

[Close]
BLAST of Csa2G021660 vs. NCBI nr
Match: gi|700205776|gb|KGN60895.1| (hypothetical protein Csa_2G021660 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 4.5e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60
           MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI
Sbjct: 1   MPSSSSSSSTLFSVFRVFVIALLFFSPVLSKGHLKLVRCYCMNMILRCRYLEVFPKSVKI 60

Query: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120
           PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD
Sbjct: 61  PLYEQLKMSVLSTPPSTYLVTRPLFLVLFHDGKPLGAAWVVMGWALNVELLRGVRSSEMD 120

Query: 121 EFTIVI 127
           EFTIVI
Sbjct: 121 EFTIVI 126

[Close]
BLAST of Csa2G021660 vs. NCBI nr
Match: gi|778666768|ref|XP_011648805.1| (PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 

Query: 1  MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK 32
          MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK
Sbjct: 1  MPSSSSSSSTLFSVFRVFVIALLFFSPVLSK 31

The following BLAST results are available for this feature:
BLAST of Csa2G021660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFR5_CUCSA3.1e-64100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021660 PE=4 SV=1[more]
BLAST of Csa2G021660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205776|gb|KGN60895.1|4.5e-64100.00hypothetical protein Csa_2G021660 [Cucumis sativus][more]
gi|778666768|ref|XP_011648805.1|3.3e-06100.00PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU158365cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G021660.1Csa2G021660.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU158365CU158365transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G021660Cucurbita moschata (Rifu)cmocuB157
Csa2G021660Cucurbita moschata (Rifu)cmocuB782
Csa2G021660Cucurbita moschata (Rifu)cmocuB783
Csa2G021660Melon (DHL92) v3.5.1cumeB139
Csa2G021660Melon (DHL92) v3.5.1cumeB144
Csa2G021660Watermelon (Charleston Gray)cuwcgB122
Csa2G021660Watermelon (97103) v1cuwmB147
Csa2G021660Cucurbita pepo (Zucchini)cpecuB103
Csa2G021660Cucurbita pepo (Zucchini)cpecuB820
Csa2G021660Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G021660Cucumber (Gy14) v2cgybcuB056
Csa2G021660Melon (DHL92) v3.6.1cumedB132
Csa2G021660Silver-seed gourdcarcuB0735
Csa2G021660Silver-seed gourdcarcuB0917
Csa2G021660Watermelon (97103) v2cuwmbB118
Csa2G021660Wax gourdcuwgoB150
Csa2G021660Cucumber (Gy14) v1cgycuB096
Csa2G021660Cucurbita maxima (Rimu)cmacuB173
Csa2G021660Cucurbita maxima (Rimu)cmacuB791