Csa2G010350.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G010350.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 1956086 .. 1956283 (+)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTCAAGGTGTTGTGCCCATACTCTTTCCGTCAAATGTTCGAAGCATCGATTTATGCAAAAAGGCAGAAGCGTTCTGCCTTTAGGCATCGCGAAACCGAGGCTAGCGCTACATCAAGTCCCACTTCATATTTTTGCTATGTTTTGTCTCGGTTCGCTTTGGTTGATCGTTTGATTCCAAATTGCTCAAATTAG

mRNA sequence

ATGGCGCTCAAGGTGTTGTGCCCATACTCTTTCCGTCAAATGTTCGAAGCATCGATTTATGCAAAAAGGCAGAAGCGTTCTGCCTTTAGGCATCGCGAAACCGAGGCTAGCGCTACATCAAGTCCCACTTCATATTTTTGCTATGTTTTGTCTCGGTTCGCTTTGGTTGATCGTTTGATTCCAAATTGCTCAAATTAG

Coding sequence (CDS)

ATGGCGCTCAAGGTGTTGTGCCCATACTCTTTCCGTCAAATGTTCGAAGCATCGATTTATGCAAAAAGGCAGAAGCGTTCTGCCTTTAGGCATCGCGAAACCGAGGCTAGCGCTACATCAAGTCCCACTTCATATTTTTGCTATGTTTTGTCTCGGTTCGCTTTGGTTGATCGTTTGATTCCAAATTGCTCAAATTAG

Protein sequence

MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLIPNCSN*
Homology
[Close]
BLAST of Csa2G010350.1 vs. TrEMBL
Match: A0A0A0LIC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010350 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.5e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI 60
          MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI
Sbjct: 1  MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI 60

Query: 61 PNCSN 66
          PNCSN
Sbjct: 61 PNCSN 65

[Close]
BLAST of Csa2G010350.1 vs. NCBI nr
Match: gi|700205680|gb|KGN60799.1| (hypothetical protein Csa_2G010350 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 9.3e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 

Query: 1  MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI 60
          MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI
Sbjct: 1  MALKVLCPYSFRQMFEASIYAKRQKRSAFRHRETEASATSSPTSYFCYVLSRFALVDRLI 60

Query: 61 PNCSN 66
          PNCSN
Sbjct: 61 PNCSN 65

The following BLAST results are available for this feature:
BLAST of Csa2G010350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIC3_CUCSA6.5e-29100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010350 PE=4 SV=1[more]
BLAST of Csa2G010350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205680|gb|KGN60799.1|9.3e-29100.00hypothetical protein Csa_2G010350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G010350Csa2G010350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G010350.1Csa2G010350.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G010350.1.cds1Csa2G010350.1.cds1CDS