Csa2G005960.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa2G005960.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 990184 .. 990564 (+)
Sequence length171
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAATCATAATTGACGATCCTCTCCTCTTTACTTTCTTCTGGACATCAAAACATATATAAAAAAATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGAGTTTTGTTTTAAGATCATCTAAAGTGACAATTAGTAAAAGTTGGAGGAAGAGAGTCGTTGAAAAGATGTGGGAATTTGAAGAGAGAATGAGCATATATATTTTGTGTGGCAGGGAAAGATTGGCAAGAGAAAGTTAGGGTTACGG

mRNA sequence

ATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGA

Coding sequence (CDS)

ATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGA

Protein sequence

MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA*
Homology
[Close]
BLAST of Csa2G005960.1 vs. TrEMBL
Match: A0A0A0LF41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005960 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 57
          MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

[Close]
BLAST of Csa2G005960.1 vs. NCBI nr
Match: gi|700205531|gb|KGN60650.1| (hypothetical protein Csa_2G005960 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 57
          MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

The following BLAST results are available for this feature:
BLAST of Csa2G005960.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF41_CUCSA3.4e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005960 PE=4 SV=1[more]
BLAST of Csa2G005960.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205531|gb|KGN60650.1|4.9e-26100.00hypothetical protein Csa_2G005960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa2G005960Csa2G005960gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa2G005960.1Csa2G005960.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G005960.1.utr5p1Csa2G005960.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G005960.1.cds1Csa2G005960.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa2G005960.1.utr3p1Csa2G005960.1.utr3p1three_prime_UTR