Csa2G005960 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G005960
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 990184 .. 990564 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAATCATAATTGACGATCCTCTCCTCTTTACTTTCTTCTGGACATCAAAACATATATAAAAAAATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGAGTTTTGTTTTAAGATCATCTAAAGTGACAATTAGTAAAAGTTGGAGGAAGAGAGTCGTTGAAAAGATGTGGGAATTTGAAGAGAGAATGAGCATATATATTTTGTGTGGCAGGGAAAGATTGGCAAGAGAAAGTTAGGGTTACGG

mRNA sequence

ATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGA

Coding sequence (CDS)

ATGGCTCCCATTTCAAGATTACCTTGTGTCTTGGGGTTGAAGAACCTTGGAGGTGATGGTGGACATGGTTATCGTGAGGGATGTGATTGTGGTTATACTACTCTTGTTTCGATGGCAGAGGGGGACAGCGACGACGACGATGGTGGATACGACTTTGCTCCGGCTGCTTGA

Protein sequence

MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA*
Homology
[Close]
BLAST of Csa2G005960 vs. TrEMBL
Match: A0A0A0LF41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005960 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 57
          MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

[Close]
BLAST of Csa2G005960 vs. NCBI nr
Match: gi|700205531|gb|KGN60650.1| (hypothetical protein Csa_2G005960 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.9e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 57
          MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA
Sbjct: 1  MAPISRLPCVLGLKNLGGDGGHGYREGCDCGYTTLVSMAEGDSDDDDGGYDFAPAA 56

The following BLAST results are available for this feature:
BLAST of Csa2G005960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF41_CUCSA3.4e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G005960 PE=4 SV=1[more]
BLAST of Csa2G005960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205531|gb|KGN60650.1|4.9e-26100.00hypothetical protein Csa_2G005960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU147668cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G005960.1Csa2G005960.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU147668CU147668transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G005960Watermelon (97103) v2cuwmbB103
Csa2G005960Watermelon (97103) v2cuwmbB142
Csa2G005960Watermelon (97103) v2cuwmbB157
Csa2G005960Watermelon (97103) v2cuwmbB162
Csa2G005960Wax gourdcuwgoB130
Csa2G005960Wax gourdcuwgoB172
Csa2G005960Wax gourdcuwgoB214
Csa2G005960Cucumber (Chinese Long) v2cucuB049
Csa2G005960Cucumber (Chinese Long) v2cucuB084
Csa2G005960Cucumber (Gy14) v1cgycuB150
Csa2G005960Cucumber (Gy14) v1cgycuB234
Csa2G005960Cucurbita maxima (Rimu)cmacuB075
Csa2G005960Cucurbita maxima (Rimu)cmacuB119
Csa2G005960Cucurbita maxima (Rimu)cmacuB172
Csa2G005960Cucurbita maxima (Rimu)cmacuB173
Csa2G005960Cucurbita maxima (Rimu)cmacuB791
Csa2G005960Cucurbita moschata (Rifu)cmocuB065
Csa2G005960Cucurbita moschata (Rifu)cmocuB105
Csa2G005960Cucurbita moschata (Rifu)cmocuB157
Csa2G005960Cucurbita moschata (Rifu)cmocuB783
Csa2G005960Melon (DHL92) v3.5.1cumeB121
Csa2G005960Melon (DHL92) v3.5.1cumeB140
Csa2G005960Watermelon (Charleston Gray)cuwcgB096
Csa2G005960Watermelon (Charleston Gray)cuwcgB148
Csa2G005960Watermelon (Charleston Gray)cuwcgB164
Csa2G005960Watermelon (Charleston Gray)cuwcgB168
Csa2G005960Watermelon (97103) v1cuwmB110
Csa2G005960Watermelon (97103) v1cuwmB120
Csa2G005960Watermelon (97103) v1cuwmB162
Csa2G005960Watermelon (97103) v1cuwmB168
Csa2G005960Cucurbita pepo (Zucchini)cpecuB103
Csa2G005960Cucurbita pepo (Zucchini)cpecuB370
Csa2G005960Cucurbita pepo (Zucchini)cpecuB662
Csa2G005960Cucurbita pepo (Zucchini)cpecuB821
Csa2G005960Bottle gourd (USVL1VR-Ls)culsiB138
Csa2G005960Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G005960Bottle gourd (USVL1VR-Ls)culsiB113
Csa2G005960Bottle gourd (USVL1VR-Ls)culsiB131
Csa2G005960Bottle gourd (USVL1VR-Ls)culsiB141
Csa2G005960Cucumber (Gy14) v2cgybcuB056
Csa2G005960Cucumber (Gy14) v2cgybcuB061
Csa2G005960Cucumber (Gy14) v2cgybcuB302
Csa2G005960Melon (DHL92) v3.6.1cumedB118
Csa2G005960Melon (DHL92) v3.6.1cumedB099
Csa2G005960Melon (DHL92) v3.6.1cumedB133
Csa2G005960Silver-seed gourdcarcuB0042
Csa2G005960Silver-seed gourdcarcuB0139
Csa2G005960Silver-seed gourdcarcuB0598
Csa2G005960Silver-seed gourdcarcuB0988