Csa1G652270.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G652270.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 25960645 .. 25963497 (+)
Sequence length282
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTAGGTATTACTATAAATGAAGTATTTTTATACAACTTTTCTATCATTGTCACATAGGCATCTATCATTGTCTATCAGTGATAGTCATCCATCATTGTCTATCACTAATAAAAAGTGATAGACAACTATCGCTGTTTATCTGCCAATGACAGAGAATGATAAATTTATCAGTATCAATAATATAATTATTTTCATATATTTTTGTGTAAGAACATACATTGCTTTTGATATGAATGAAAATGAGAATTTTAAATTTTGCTTCATGGTTATTGGTTCATCTATTGAGGGTTAGAAGTATTGTAGATCTACCATATCTGTTAACGACACATTTCTAAAGTGTAAGTTTGGTAGTACTCTATTAGTAGCCTCAACCGTAGATGGTAACAACTATATCTTTTACCTAGCATTTGCTATTATTGACTTAGAAAATGATGCATACTAGAAATGGTTTTTTCTTTAAAATATACATACTTGTTTGGAAAATTGTGCTTGCTTTAAATGTGTTTAAAGATGTTGAGTATTGTGTTTGCATGCAACATGTTTTTAAAAATTTGAAGAAGTCTTTCAGGGATTCTTTGATTGACCGGTTTTACTTTAGTTGTGCTAAAACTTATACTTTTGAAGACTTTGAGTTCAACATAAGATATATGGAGTTCATTTATCCAAATATACTAAGTTATCTTAGTAATATAGGATTTAATAGGTGTTTTCAAGCATATTCACCAAGAAGAAGATACAAAATGATGACAACAAATCCTTTGGAAAGTGTTAACTCAATTTTGAAAGAAAATAAAAACTTGCATGTTGCAAGTTTAATCGATGGAATTAGAGAGTTTTTGCAAAAGTGGTTTCATGATCGAAGAAAAGCTAGCTTGTCAATGCATACATCTTGCACACATCTTGTAAATATCTTGCAATGTTCAAATTTGAAATACTAAACTCCAAATCAATTATATATTACGTGTAAAAAAATAATAGCTATTTTTTTTCTAAAATAAATGTAGAAGCACCATAAATCATATAAAACAAGTATATGATTGATTTGAGATTAAACATTTGAAGTTTGAAAGTAGTGAGATGTTTGCGAGATGTCTGTGAAATGTTTGCGAGATGAAAAACAAAAAACTTGCTAAATATGTATAAAACAACCCTATATCACTAGATCAATCATAAGATTGATTTTAGGTCATTTAAGGTTTAAACATTTCACTCGAGAACATTAAAAACTAAGAGGGTTATCTACAACAATAATAAAAAAAAAAAAAACATAAACACCTCCCAAAATAGTAAGAGAGTTTGTTCGACTAAAAATTTTAAGTAATGGTAAGAGAGCTTGAGTAGGTAGAAAGAAGTTAGAGAAAGACGAGAGAAAAAGTAAAATAAGAAAGATTTTTTTTAGGAAAAACAAAAGAATAAGAAAAATATGGTCCGTTTCGATTGAATTAACAACAAAATATTTTTTAATAATACATTTCCTTTTCAATATTTTTTTGGGTATGAGTTTAAAATTTAAACACGTGAGGTTTGGTCAGATGATGTGAATTTGATTTTTAAAGATAAAAAATAGATTATTTTATAAATAAATTTTTAAAAAAGGTATTATTTTAATTTGTCAAACGCTACCATTTTTTTAAAATAGTTTTTTTTGACAAAATTAATCACTTTATAATCTCAACCAAACACATTTTTAAGGACATTCTGTGACTTTTTCTACTCCATTTATCCTAAAACCCAACTTTTTAAAGAGAATCCAAACGATCAATCTAAGACTCTCAACTAGATTACATCTTCAAATGTGCAATTTAAAAAATAAATTATTTTAAAAAACTATAGTTTTTAAAGCAACTAACAACAAATTTTTATTTATGTTTTAAATAATTTTTTAAAGAAAAAAAGTTTAAATAAAAATAAAATTCTTCAAAATCATTTTTTTCTTAACTCAATTGCTCATTCTAAATGGACCTATTTTTAGTAATTCACAGCAACTATATCGTTTAAAAATAATTTTCTTTAAAAAAAGAAAGAAAAGGATAAAGCTACCCCCGTCAATCGCCACCGCCTCACGTCTACCTCTCTCTCACAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGGTGAGTTTTTGTGTTAGTTGGAAAGATGTTTTTGACGCATCTAGAATGCCTGTTAACTGATGGTCTCAGTATATTGACACCCTTTGTGTTTCGGTTTTAGATTGAATATCAGAATTGTTGTTAGTTACTGTCCTGCAAGTTCGGGACCGGTTTCGGCAAGAGGTGGATAAGTATTTGTCTTTGAGGTTTGAGGGCCGTTTGGAATGTTAAGGATGCTTTAAATTAATTTTCTAATTCTTGGCGGTGGTCTATGTTCGGGTTGGGTTACTTGATTGAAGTTTCGAAGTGGTTTTGGATCAAACCACGTGTTGGGTAAGTCGTGCAGTATGGAGTTTTTGTTATAAGTTAAATGTATGTTTAGAATGAAGTCTTATACAGTTTGGAATAAGTATGCAAGGTGTTATTCGGATGTTAATAAATCACACTCGTCCATTAATTTTTAGATTTGTGGAAAGATTTGTAGATTGAACCAATGTTGATTTTAATTTGCAGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

mRNA sequence

ATGAATCTAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

Coding sequence (CDS)

ATGAATCTAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

Protein sequence

MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFLASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ*
Homology
[Close]
BLAST of Csa1G652270.1 vs. TrEMBL
Match: A0A0A0M023_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652270 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60
          MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL
Sbjct: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60

Query: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 94
          ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ
Sbjct: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 93

[Close]
BLAST of Csa1G652270.1 vs. NCBI nr
Match: gi|700211548|gb|KGN66644.1| (hypothetical protein Csa_1G652270 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60
          MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL
Sbjct: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60

Query: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 94
          ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ
Sbjct: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 93

The following BLAST results are available for this feature:
BLAST of Csa1G652270.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M023_CUCSA1.7e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652270 PE=4 SV=1[more]
BLAST of Csa1G652270.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211548|gb|KGN66644.1|2.5e-43100.00hypothetical protein Csa_1G652270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G652270Csa1G652270gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G652270.1Csa1G652270.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G652270.1.cds1Csa1G652270.1.cds1CDS
Csa1G652270.1.cds2Csa1G652270.1.cds2CDS
Csa1G652270.1.cds3Csa1G652270.1.cds3CDS