Csa1G652270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G652270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 25960645 .. 25963497 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTAGGTATTACTATAAATGAAGTATTTTTATACAACTTTTCTATCATTGTCACATAGGCATCTATCATTGTCTATCAGTGATAGTCATCCATCATTGTCTATCACTAATAAAAAGTGATAGACAACTATCGCTGTTTATCTGCCAATGACAGAGAATGATAAATTTATCAGTATCAATAATATAATTATTTTCATATATTTTTGTGTAAGAACATACATTGCTTTTGATATGAATGAAAATGAGAATTTTAAATTTTGCTTCATGGTTATTGGTTCATCTATTGAGGGTTAGAAGTATTGTAGATCTACCATATCTGTTAACGACACATTTCTAAAGTGTAAGTTTGGTAGTACTCTATTAGTAGCCTCAACCGTAGATGGTAACAACTATATCTTTTACCTAGCATTTGCTATTATTGACTTAGAAAATGATGCATACTAGAAATGGTTTTTTCTTTAAAATATACATACTTGTTTGGAAAATTGTGCTTGCTTTAAATGTGTTTAAAGATGTTGAGTATTGTGTTTGCATGCAACATGTTTTTAAAAATTTGAAGAAGTCTTTCAGGGATTCTTTGATTGACCGGTTTTACTTTAGTTGTGCTAAAACTTATACTTTTGAAGACTTTGAGTTCAACATAAGATATATGGAGTTCATTTATCCAAATATACTAAGTTATCTTAGTAATATAGGATTTAATAGGTGTTTTCAAGCATATTCACCAAGAAGAAGATACAAAATGATGACAACAAATCCTTTGGAAAGTGTTAACTCAATTTTGAAAGAAAATAAAAACTTGCATGTTGCAAGTTTAATCGATGGAATTAGAGAGTTTTTGCAAAAGTGGTTTCATGATCGAAGAAAAGCTAGCTTGTCAATGCATACATCTTGCACACATCTTGTAAATATCTTGCAATGTTCAAATTTGAAATACTAAACTCCAAATCAATTATATATTACGTGTAAAAAAATAATAGCTATTTTTTTTCTAAAATAAATGTAGAAGCACCATAAATCATATAAAACAAGTATATGATTGATTTGAGATTAAACATTTGAAGTTTGAAAGTAGTGAGATGTTTGCGAGATGTCTGTGAAATGTTTGCGAGATGAAAAACAAAAAACTTGCTAAATATGTATAAAACAACCCTATATCACTAGATCAATCATAAGATTGATTTTAGGTCATTTAAGGTTTAAACATTTCACTCGAGAACATTAAAAACTAAGAGGGTTATCTACAACAATAATAAAAAAAAAAAAAACATAAACACCTCCCAAAATAGTAAGAGAGTTTGTTCGACTAAAAATTTTAAGTAATGGTAAGAGAGCTTGAGTAGGTAGAAAGAAGTTAGAGAAAGACGAGAGAAAAAGTAAAATAAGAAAGATTTTTTTTAGGAAAAACAAAAGAATAAGAAAAATATGGTCCGTTTCGATTGAATTAACAACAAAATATTTTTTAATAATACATTTCCTTTTCAATATTTTTTTGGGTATGAGTTTAAAATTTAAACACGTGAGGTTTGGTCAGATGATGTGAATTTGATTTTTAAAGATAAAAAATAGATTATTTTATAAATAAATTTTTAAAAAAGGTATTATTTTAATTTGTCAAACGCTACCATTTTTTTAAAATAGTTTTTTTTGACAAAATTAATCACTTTATAATCTCAACCAAACACATTTTTAAGGACATTCTGTGACTTTTTCTACTCCATTTATCCTAAAACCCAACTTTTTAAAGAGAATCCAAACGATCAATCTAAGACTCTCAACTAGATTACATCTTCAAATGTGCAATTTAAAAAATAAATTATTTTAAAAAACTATAGTTTTTAAAGCAACTAACAACAAATTTTTATTTATGTTTTAAATAATTTTTTAAAGAAAAAAAGTTTAAATAAAAATAAAATTCTTCAAAATCATTTTTTTCTTAACTCAATTGCTCATTCTAAATGGACCTATTTTTAGTAATTCACAGCAACTATATCGTTTAAAAATAATTTTCTTTAAAAAAAGAAAGAAAAGGATAAAGCTACCCCCGTCAATCGCCACCGCCTCACGTCTACCTCTCTCTCACAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGGTGAGTTTTTGTGTTAGTTGGAAAGATGTTTTTGACGCATCTAGAATGCCTGTTAACTGATGGTCTCAGTATATTGACACCCTTTGTGTTTCGGTTTTAGATTGAATATCAGAATTGTTGTTAGTTACTGTCCTGCAAGTTCGGGACCGGTTTCGGCAAGAGGTGGATAAGTATTTGTCTTTGAGGTTTGAGGGCCGTTTGGAATGTTAAGGATGCTTTAAATTAATTTTCTAATTCTTGGCGGTGGTCTATGTTCGGGTTGGGTTACTTGATTGAAGTTTCGAAGTGGTTTTGGATCAAACCACGTGTTGGGTAAGTCGTGCAGTATGGAGTTTTTGTTATAAGTTAAATGTATGTTTAGAATGAAGTCTTATACAGTTTGGAATAAGTATGCAAGGTGTTATTCGGATGTTAATAAATCACACTCGTCCATTAATTTTTAGATTTGTGGAAAGATTTGTAGATTGAACCAATGTTGATTTTAATTTGCAGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

mRNA sequence

ATGAATCTAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

Coding sequence (CDS)

ATGAATCTAGCCATCTGCAGAAATCTCCAACGGACAGCCTCTCCGTCGTCGTTGGCCGCCGTTCGACCACTCCCCACCGACGCCCGCGTTGGTCCGATAAGTTGCGCGCCGCCTAACGATCTTGCCATCAGCCCTCTCGGGTCTGCTGTTCGCCGCCGGTCATTGCTACGCCTCTTCTTGGCGTCCAGTGTCTCCACCTTCGTTCTTGTGGTCTTCTCCGGAATTTCGTTTGGTATAGAAGCTGTTTCTTTTGATTGTAGATTGTCTAAGAAATGGCAATAA

Protein sequence

MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFLASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ*
Homology
[Close]
BLAST of Csa1G652270 vs. TrEMBL
Match: A0A0A0M023_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652270 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60
          MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL
Sbjct: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60

Query: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 94
          ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ
Sbjct: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 93

[Close]
BLAST of Csa1G652270 vs. NCBI nr
Match: gi|700211548|gb|KGN66644.1| (hypothetical protein Csa_1G652270 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60
          MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL
Sbjct: 1  MNLAICRNLQRTASPSSLAAVRPLPTDARVGPISCAPPNDLAISPLGSAVRRRSLLRLFL 60

Query: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 94
          ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ
Sbjct: 61 ASSVSTFVLVVFSGISFGIEAVSFDCRLSKKWQ 93

The following BLAST results are available for this feature:
BLAST of Csa1G652270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M023_CUCSA1.7e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652270 PE=4 SV=1[more]
BLAST of Csa1G652270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211548|gb|KGN66644.1|2.5e-43100.00hypothetical protein Csa_1G652270 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU159148cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G652270.1Csa1G652270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU159148CU159148transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G652270Melon (DHL92) v3.6.1cumedB035
Csa1G652270Silver-seed gourdcarcuB0565
Csa1G652270Silver-seed gourdcarcuB0982
Csa1G652270Watermelon (97103) v2cuwmbB035
Csa1G652270Wax gourdcuwgoB110
Csa1G652270Cucumber (Gy14) v1cgycuB500
Csa1G652270Cucurbita maxima (Rimu)cmacuB057
Csa1G652270Cucurbita maxima (Rimu)cmacuB085
Csa1G652270Cucurbita moschata (Rifu)cmocuB075
Csa1G652270Cucurbita moschata (Rifu)cmocuB047
Csa1G652270Melon (DHL92) v3.5.1cumeB043
Csa1G652270Watermelon (Charleston Gray)cuwcgB038
Csa1G652270Watermelon (97103) v1cuwmB011
Csa1G652270Cucurbita pepo (Zucchini)cpecuB000
Csa1G652270Cucurbita pepo (Zucchini)cpecuB349
Csa1G652270Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G652270Cucumber (Gy14) v2cgybcuB002