Csa1G612940.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G612940.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 23993048 .. 23993209 (-)
Sequence length	162

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGTGGCGGGAAAACGGCTGACGAAGGCTCAAAGTCCCAACCGATCACAATTCACACACTACATTCGCCGGAACTGTACCCCCACGGCCGGCCGGAAACTATCTATATCCAGTGGCCGTCGTCGCTCTTATCTGGCCAAAGACAAATGAAGCTCTGA

mRNA sequence

ATGCCGAGTGGCGGGAAAACGGCTGACGAAGGCTCAAAGTCCCAACCGATCACAATTCACACACTACATTCGCCGGAACTGTACCCCCACGGCCGGCCGGAAACTATCTATATCCAGTGGCCGTCGTCGCTCTTATCTGGCCAAAGACAAATGAAGCTCTGA

Coding sequence (CDS)

ATGCCGAGTGGCGGGAAAACGGCTGACGAAGGCTCAAAGTCCCAACCGATCACAATTCACACACTACATTCGCCGGAACTGTACCCCCACGGCCGGCCGGAAACTATCTATATCCAGTGGCCGTCGTCGCTCTTATCTGGCCAAAGACAAATGAAGCTCTGA

Protein sequence

MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL*

Homology

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BLAST of Csa1G612940.1 vs. TrEMBL
Match: A0A0A0M2Q9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G612940 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL 54
          MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL
Sbjct: 1  MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL 53

[Close]

BLAST of Csa1G612940.1 vs. NCBI nr
Match: gi|700211375|gb|KGN66471.1| (hypothetical protein Csa_1G612940 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.2e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 1  MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL 54
          MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL
Sbjct: 1  MPSGGKTADEGSKSQPITIHTLHSPELYPHGRPETIYIQWPSSLLSGQRQMKL 53

The following BLAST results are available for this feature:

BLAST of Csa1G612940.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2Q9_CUCSA	4.4e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G612940 PE=4 SV=1	[more]

BLAST of Csa1G612940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211375\|gb\|KGN66471.1\|	6.2e-23	100.00	hypothetical protein Csa_1G612940 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G612940	Csa1G612940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G612940.1	Csa1G612940.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G612940.1.cds1	Csa1G612940.1.cds1	CDS