Csa1G537350.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G537350.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 19358667 .. 19358931 (-)
Sequence length177
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCGGTGACAAAGACACCCAAGATCTTTTATGGAAAATCCTCCATAGCAGTAGCAACTCTGAGGCTGTTTAAGCTGTGGCCAACGAGGACCACCCTCTTGTCGGAGGAAAACTAGTCAAGAACTTTGTCAAGGGGTGAAAGTACTGAAAAGCTGAGGATATAGTCTTAGAGTGTATGGGGTTGACGTCGGAGGTAGCCATGTCGACAGCAGTGACGTTGTGGCCCTTCGATTAAAGAAAGGTGGAGAGCTTGTACCATGA

mRNA sequence

ATGGTGGCGGTGACAAAGACACCCAAGATCTTTTATGGAAAATCCTCCATAGCAGTAGCAACTCTGAGGCTGTTTAAGCTTCTTAGAGTGTATGGGGTTGACGTCGGAGGTAGCCATGTCGACAGCAGTGACGTTGTGGCCCTTCGATTAAAGAAAGGTGGAGAGCTTGTACCATGA

Coding sequence (CDS)

ATGGTGGCGGTGACAAAGACACCCAAGATCTTTTATGGAAAATCCTCCATAGCAGTAGCAACTCTGAGGCTGTTTAAGCTTCTTAGAGTGTATGGGGTTGACGTCGGAGGTAGCCATGTCGACAGCAGTGACGTTGTGGCCCTTCGATTAAAGAAAGGTGGAGAGCTTGTACCATGA

Protein sequence

MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP*
Homology
[Close]
BLAST of Csa1G537350.1 vs. TrEMBL
Match: A0A0A0LVE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537350 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP 59
          MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP
Sbjct: 1  MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP 58

[Close]
BLAST of Csa1G537350.1 vs. NCBI nr
Match: gi|700210789|gb|KGN65885.1| (hypothetical protein Csa_1G537350 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP 59
          MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP
Sbjct: 1  MVAVTKTPKIFYGKSSIAVATLRLFKLLRVYGVDVGGSHVDSSDVVALRLKKGGELVP 58

The following BLAST results are available for this feature:
BLAST of Csa1G537350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVE4_CUCSA6.2e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537350 PE=4 SV=1[more]
BLAST of Csa1G537350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210789|gb|KGN65885.1|8.9e-23100.00hypothetical protein Csa_1G537350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G537350Csa1G537350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G537350.1Csa1G537350.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G537350.1.cds2Csa1G537350.1.cds2CDS
Csa1G537350.1.cds1Csa1G537350.1.cds1CDS