Csa1G366970.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G366970.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 14247823 .. 14248511 (+)
Sequence length	210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGTTCTATCAACTTCATCTAGACAGCTTTTTCATCTTTCTTGATTCTTCAATTCCTTTACTTTGTTTGATAACAACATATATGTATCTGATATTCAATACTTGAGTTAGTTCTTTTCATATCCCCAACCATCAGTTATTGAAGAATCAACAATGAACCTTCTCTTTTCTTTTTTTTTGGTTGCAGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGATGAAAAGTGGCACATCTTTTTCAGAGACCCATCTCGATTTTTTCCCCTCGGGTTTATCTGGCTTTTCCGATGCCATTGGGAGGTCTATTTCGAAGGTTATTATTTGAAAACTACTTTGATTGTGACCTAAAACTTGCAATAAAATGAAATCATGCTTGTTGCTTTCTCTCTTGTCATTAGGTAAATGCATCCCCCTCTTGTTTGTAATTTCTTAGTGGTGTGTCCACTTTCCCACGTCTGATTGATCATATTCTCAAATTAATCGAGTTTGAAACGAC

mRNA sequence

ATGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGA

Coding sequence (CDS)

ATGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGA

Protein sequence

MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFLVNFLKCFW*

Homology

[Close]

BLAST of Csa1G366970.1 vs. TrEMBL
Match: A0A0A0LTU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 61 LVNFLKCFW 70
          LVNFLKCFW
Sbjct: 61 LVNFLKCFW 69

[Close]

BLAST of Csa1G366970.1 vs. TrEMBL
Match: D7TBP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]

BLAST of Csa1G366970.1 vs. TrEMBL
Match: A0A0D2SNW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-21
Identity = 49/68 (72.06%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          M+LTP LFRSL+RLL+SL+ +P ASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1  MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 61 LVNFLKCF 69
          L+NFL+CF
Sbjct: 61 LINFLRCF 68

[Close]

BLAST of Csa1G366970.1 vs. TrEMBL
Match: A0A059CMT8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LT  +FRSLVRL+ SL+  P ASV+T+L+YS +LPQ +V ERLVRHELLD ENYLFHF
Sbjct: 35  MSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSVVLERLVRHELLDHENYLFHF 94

Query: 61  LVNFLKCFW 70
           LVNFL+CFW
Sbjct: 95  LVNFLRCFW 103

[Close]

BLAST of Csa1G366970.1 vs. TrEMBL
Match: A0A067EIZ2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045301mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 41/68 (60.29%), Postives = 59/68 (86.76%), Query Frame = 1


Query: 2  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 61
          +LTP +FRS+VRL+ S++ +PV SV+T+L+YS++LP ++  ER+VR +LL RENYLFHFL
Sbjct: 1  SLTPLMFRSVVRLVTSIVDEPVVSVTTILYYSELLPHNIFLERMVRRQLLGRENYLFHFL 60

Query: 62 VNFLKCFW 70
          +NFL+CFW
Sbjct: 61 INFLRCFW 68

[Close]

BLAST of Csa1G366970.1 vs. NCBI nr
Match: gi|700210254|gb|KGN65350.1| (hypothetical protein Csa_1G366970 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 61 LVNFLKCFW 70
          LVNFLKCFW
Sbjct: 61 LVNFLKCFW 69

[Close]

BLAST of Csa1G366970.1 vs. NCBI nr
Match: gi|297738835|emb|CBI28080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]

BLAST of Csa1G366970.1 vs. NCBI nr
Match: gi|731406947|ref|XP_002281062.2| (PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1


Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 72  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 131

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 132 LINFLRCFW 140

[Close]

BLAST of Csa1G366970.1 vs. NCBI nr
Match: gi|763797938|gb|KJB64893.1| (hypothetical protein B456_010G070600 [Gossypium raimondii])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 49/68 (72.06%), Postives = 63/68 (92.65%), Query Frame = 1


Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          M+LTP LFRSL+RLL+SL+ +P ASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1  MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 61 LVNFLKCF 69
          L+NFL+CF
Sbjct: 61 LINFLRCF 68

[Close]

BLAST of Csa1G366970.1 vs. NCBI nr
Match: gi|629115017|gb|KCW79692.1| (hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LT  +FRSLVRL+ SL+  P ASV+T+L+YS +LPQ +V ERLVRHELLD ENYLFHF
Sbjct: 35  MSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSVVLERLVRHELLDHENYLFHF 94

Query: 61  LVNFLKCFW 70
           LVNFL+CFW
Sbjct: 95  LVNFLRCFW 103

The following BLAST results are available for this feature:

BLAST of Csa1G366970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU9_CUCSA	5.6e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1	[more]
D7TBP5_VITVI	5.6e-23	73.91	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=...	[more]
A0A0D2SNW9_GOSRA	1.8e-21	72.06	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1	[more]
A0A059CMT8_EUCGR	1.5e-20	71.01	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1	[more]
A0A067EIZ2_CITSI	4.2e-18	60.29	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045301mg PE=4 S...	[more]

BLAST of Csa1G366970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210254\|gb\|KGN65350.1\|	8.1e-31	100.00	hypothetical protein Csa_1G366970 [Cucumis sativus]	[more]
gi\|297738835\|emb\|CBI28080.3\|	8.1e-23	73.91	unnamed protein product [Vitis vinifera]	[more]
gi\|731406947\|ref\|XP_002281062.2\|	8.1e-23	73.91	PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]	[more]
gi\|763797938\|gb\|KJB64893.1\|	2.6e-21	72.06	hypothetical protein B456_010G070600 [Gossypium raimondii]	[more]
gi\|629115017\|gb\|KCW79692.1\|	2.2e-20	71.01	hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G366970	Csa1G366970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa1G366970.1	Csa1G366970.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G366970.1.cds1	Csa1G366970.1.cds1	CDS
Csa1G366970.1.cds2	Csa1G366970.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa1G366970.1.utr3p1	Csa1G366970.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37900	FAMILY NOT NAMED	coord: 2..69 score: 5.6
None	No IPR available	PANTHER	PTHR37900:SF1	SUBFAMILY NOT NAMED	coord: 2..69 score: 5.6