Csa1G366970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G366970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 14247823 .. 14248511 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATGTTCTATCAACTTCATCTAGACAGCTTTTTCATCTTTCTTGATTCTTCAATTCCTTTACTTTGTTTGATAACAACATATATGTATCTGATATTCAATACTTGAGTTAGTTCTTTTCATATCCCCAACCATCAGTTATTGAAGAATCAACAATGAACCTTCTCTTTTCTTTTTTTTTGGTTGCAGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGAAGAAAGAAGAAGATGAAAAGTGGCACATCTTTTTCAGAGACCCATCTCGATTTTTTCCCCTCGGGTTTATCTGGCTTTTCCGATGCCATTGGGAGGTCTATTTCGAAGGTTATTATTTGAAAACTACTTTGATTGTGACCTAAAACTTGCAATAAAATGAAATCATGCTTGTTGCTTTCTCTCTTGTCATTAGGTAAATGCATCCCCCTCTTGTTTGTAATTTCTTAGTGGTGTGTCCACTTTCCCACGTCTGATTGATCATATTCTCAAATTAATCGAGTTTGAAACGAC

mRNA sequence

ATGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGA

Coding sequence (CDS)

ATGAATCTTACCCCCTTTCTGTTTAGGTCACTCGTAAGGCTGCTACTATCCCTAATTGTCCAGCCTGTGGCCTCTGTCTCAACCTTGCTTTTCTACAGTGACATTCTTCCTCAGCATATGGTTTCAGAGCGACTTGTTCGACATGAATTGCTTGATCGAGAAAACTACCTATTCCATTTTCTTGTTAACTTTTTGAAGTGCTTTTGGTGA

Protein sequence

MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFLVNFLKCFW*
Homology
[Close]
BLAST of Csa1G366970 vs. TrEMBL
Match: A0A0A0LTU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.6e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 61 LVNFLKCFW 70
          LVNFLKCFW
Sbjct: 61 LVNFLKCFW 69

[Close]
BLAST of Csa1G366970 vs. TrEMBL
Match: D7TBP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]
BLAST of Csa1G366970 vs. TrEMBL
Match: A0A0D2SNW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-21
Identity = 49/68 (72.06%), Postives = 63/68 (92.65%), Query Frame = 1 

Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          M+LTP LFRSL+RLL+SL+ +P ASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1  MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 61 LVNFLKCF 69
          L+NFL+CF
Sbjct: 61 LINFLRCF 68

[Close]
BLAST of Csa1G366970 vs. TrEMBL
Match: A0A059CMT8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-20
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LT  +FRSLVRL+ SL+  P ASV+T+L+YS +LPQ +V ERLVRHELLD ENYLFHF
Sbjct: 35  MSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSVVLERLVRHELLDHENYLFHF 94

Query: 61  LVNFLKCFW 70
           LVNFL+CFW
Sbjct: 95  LVNFLRCFW 103

[Close]
BLAST of Csa1G366970 vs. TrEMBL
Match: A0A067EIZ2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045301mg PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 41/68 (60.29%), Postives = 59/68 (86.76%), Query Frame = 1 

Query: 2  NLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHFL 61
          +LTP +FRS+VRL+ S++ +PV SV+T+L+YS++LP ++  ER+VR +LL RENYLFHFL
Sbjct: 1  SLTPLMFRSVVRLVTSIVDEPVVSVTTILYYSELLPHNIFLERMVRRQLLGRENYLFHFL 60

Query: 62 VNFLKCFW 70
          +NFL+CFW
Sbjct: 61 INFLRCFW 68

[Close]
BLAST of Csa1G366970 vs. NCBI nr
Match: gi|700210254|gb|KGN65350.1| (hypothetical protein Csa_1G366970 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF
Sbjct: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60

Query: 61 LVNFLKCFW 70
          LVNFLKCFW
Sbjct: 61 LVNFLKCFW 69

[Close]
BLAST of Csa1G366970 vs. NCBI nr
Match: gi|297738835|emb|CBI28080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 71  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 130

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 131 LINFLRCFW 139

[Close]
BLAST of Csa1G366970 vs. NCBI nr
Match: gi|731406947|ref|XP_002281062.2| (PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 51/69 (73.91%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LTP +FRSLVRL+ SL+ QP AS+STLL+YSD+LPQ++V ERLV+HELLD+ENYLFHF
Sbjct: 72  MSLTPLMFRSLVRLVSSLVGQPAASISTLLYYSDLLPQNIVLERLVQHELLDQENYLFHF 131

Query: 61  LVNFLKCFW 70
           L+NFL+CFW
Sbjct: 132 LINFLRCFW 140

[Close]
BLAST of Csa1G366970 vs. NCBI nr
Match: gi|763797938|gb|KJB64893.1| (hypothetical protein B456_010G070600 [Gossypium raimondii])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 49/68 (72.06%), Postives = 63/68 (92.65%), Query Frame = 1 

Query: 1  MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
          M+LTP LFRSL+RLL+SL+ +P ASV+TLL+YSD LPQ+++ ERLVRHE+LD+ENYLFHF
Sbjct: 1  MSLTPLLFRSLLRLLMSLLTEPAASVATLLYYSDNLPQNIIWERLVRHEMLDQENYLFHF 60

Query: 61 LVNFLKCF 69
          L+NFL+CF
Sbjct: 61 LINFLRCF 68

[Close]
BLAST of Csa1G366970 vs. NCBI nr
Match: gi|629115017|gb|KCW79692.1| (hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis])

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 1   MNLTPFLFRSLVRLLLSLIVQPVASVSTLLFYSDILPQHMVSERLVRHELLDRENYLFHF 60
           M+LT  +FRSLVRL+ SL+  P ASV+T+L+YS +LPQ +V ERLVRHELLD ENYLFHF
Sbjct: 35  MSLTTLMFRSLVRLVTSLVGDPAASVTTILYYSTLLPQSVVLERLVRHELLDHENYLFHF 94

Query: 61  LVNFLKCFW 70
           LVNFL+CFW
Sbjct: 95  LVNFLRCFW 103

The following BLAST results are available for this feature:
BLAST of Csa1G366970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTU9_CUCSA5.6e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G366970 PE=4 SV=1[more]
D7TBP5_VITVI5.6e-2373.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g04000 PE=4 SV=... [more]
A0A0D2SNW9_GOSRA1.8e-2172.06Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070600 PE=4 SV=1[more]
A0A059CMT8_EUCGR1.5e-2071.01Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01044 PE=4 SV=1[more]
A0A067EIZ2_CITSI4.2e-1860.29Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g045301mg PE=4 S... [more]
BLAST of Csa1G366970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210254|gb|KGN65350.1|8.1e-31100.00hypothetical protein Csa_1G366970 [Cucumis sativus][more]
gi|297738835|emb|CBI28080.3|8.1e-2373.91unnamed protein product [Vitis vinifera][more]
gi|731406947|ref|XP_002281062.2|8.1e-2373.91PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera][more]
gi|763797938|gb|KJB64893.1|2.6e-2172.06hypothetical protein B456_010G070600 [Gossypium raimondii][more]
gi|629115017|gb|KCW79692.1|2.2e-2071.01hypothetical protein EUGRSUZ_C01044 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G366970.1Csa1G366970.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37900FAMILY NOT NAMEDcoord: 2..69
score: 5.6
NoneNo IPR availablePANTHERPTHR37900:SF1SUBFAMILY NOT NAMEDcoord: 2..69
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G366970Cla97C06G118240Watermelon (97103) v2cuwmbB083
Csa1G366970Cucsa.235540Cucumber (Gy14) v1cgycuB333
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G366970Wax gourdcuwgoB004
Csa1G366970Wax gourdcuwgoB098
Csa1G366970Cucumber (Gy14) v1cgycuB149
Csa1G366970Cucurbita maxima (Rimu)cmacuB063
Csa1G366970Cucurbita maxima (Rimu)cmacuB103
Csa1G366970Cucurbita maxima (Rimu)cmacuB783
Csa1G366970Cucurbita moschata (Rifu)cmocuB053
Csa1G366970Cucurbita moschata (Rifu)cmocuB090
Csa1G366970Melon (DHL92) v3.5.1cumeB003
Csa1G366970Watermelon (97103) v1cuwmB098
Csa1G366970Cucurbita pepo (Zucchini)cpecuB355
Csa1G366970Cucurbita pepo (Zucchini)cpecuB640
Csa1G366970Bottle gourd (USVL1VR-Ls)culsiB062
Csa1G366970Cucumber (Gy14) v2cgybcuB002
Csa1G366970Melon (DHL92) v3.6.1cumedB050
Csa1G366970Silver-seed gourdcarcuB0039
Csa1G366970Silver-seed gourdcarcuB0134
Csa1G366970Silver-seed gourdcarcuB0596