Csa1G268300.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G268300.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13002223 .. 13002567 (+)
Sequence length345
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

mRNA sequence

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Coding sequence (CDS)

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Protein sequence

MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH*
Homology
[Close]
BLAST of Csa1G268300.1 vs. TrEMBL
Match: A0A0A0LZ25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G268300 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

[Close]
BLAST of Csa1G268300.1 vs. NCBI nr
Match: gi|700210140|gb|KGN65236.1| (hypothetical protein Csa_1G268300 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 

Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

The following BLAST results are available for this feature:
BLAST of Csa1G268300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ25_CUCSA2.8e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G268300 PE=4 SV=1[more]
BLAST of Csa1G268300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210140|gb|KGN65236.1|4.0e-59100.00hypothetical protein Csa_1G268300 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G268300Csa1G268300gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G268300.1Csa1G268300.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G268300.1.cds1Csa1G268300.1.cds1CDS