Csa1G268300 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G268300
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 13002223 .. 13002567 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

mRNA sequence

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Coding sequence (CDS)

ATGGTTATTGTTAGCACAACAAACCCTCCAAATATTTCCATAGTGGTATATGAGATATTGTCCAATTTGGGTATATACCCTCATGACTTTGCTTTTGGTATCATCCCAAAAGGTCTCGTAGTAACAAAAAAAATTGTCCTCACTTATATACTCAAGACCATCCTCTTATCTAACCAATGTGGAACTTTAGTCCCATTTACAGTTATTTTGCCCTACAACTGTGTTATAATTGAGTGGGTTCAAGGCTCCACCGTCAACTTCATATGTCCCACATCAAGTCCCAGTTCGTGCATACTTTCTTCCCTCTCAGGCTTTCCCGTCTACGACGAGCCTCCACACCACTAG

Protein sequence

MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQCGTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH*

Homology

[Close]

BLAST of Csa1G268300 vs. TrEMBL
Match: A0A0A0LZ25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G268300 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

[Close]

BLAST of Csa1G268300 vs. NCBI nr
Match: gi|700210140|gb|KGN65236.1| (hypothetical protein Csa_1G268300 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60
           MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC
Sbjct: 1   MVIVSTTNPPNISIVVYEILSNLGIYPHDFAFGIIPKGLVVTKKIVLTYILKTILLSNQC 60

Query: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 115
           GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH
Sbjct: 61  GTLVPFTVILPYNCVIIEWVQGSTVNFICPTSSPSSCILSSLSGFPVYDEPPHH 114

The following BLAST results are available for this feature:

BLAST of Csa1G268300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ25_CUCSA	2.8e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G268300 PE=4 SV=1	[more]

BLAST of Csa1G268300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210140\|gb\|KGN65236.1\|	4.0e-59	100.00	hypothetical protein Csa_1G268300 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G268300.1	Csa1G268300.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G268300	Silver-seed gourd	carcuB0133
Csa1G268300	Silver-seed gourd	carcuB0531
Csa1G268300	Watermelon (97103) v2	cuwmbB066
Csa1G268300	Wax gourd	cuwgoB099
Csa1G268300	Cucumber (Gy14) v1	cgycuB491
Csa1G268300	Cucurbita maxima (Rimu)	cmacuB060
Csa1G268300	Cucurbita maxima (Rimu)	cmacuB100
Csa1G268300	Cucurbita moschata (Rifu)	cmocuB048
Csa1G268300	Cucurbita moschata (Rifu)	cmocuB088
Csa1G268300	Melon (DHL92) v3.5.1	cumeB057
Csa1G268300	Watermelon (Charleston Gray)	cuwcgB067
Csa1G268300	Watermelon (97103) v1	cuwmB080
Csa1G268300	Cucurbita pepo (Zucchini)	cpecuB350
Csa1G268300	Cucurbita pepo (Zucchini)	cpecuB636
Csa1G268300	Cucumber (Gy14) v2	cgybcuB003
Csa1G268300	Melon (DHL92) v3.6.1	cumedB049