Csa1G166840.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G166840.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10424475 .. 10424660 (+)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

mRNA sequence

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Coding sequence (CDS)

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Protein sequence

MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTWR*
Homology
[Close]
BLAST of Csa1G166840.1 vs. TrEMBL
Match: A0A0A0LSR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166840 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of Csa1G166840.1 vs. NCBI nr
Match: gi|700209859|gb|KGN64955.1| (hypothetical protein Csa_1G166840 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:
BLAST of Csa1G166840.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSR6_CUCSA7.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166840 PE=4 SV=1[more]
BLAST of Csa1G166840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209859|gb|KGN64955.1|1.1e-26100.00hypothetical protein Csa_1G166840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G166840Csa1G166840gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G166840.1Csa1G166840.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G166840.1.cds1Csa1G166840.1.cds1CDS