Csa1G166840 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G166840
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10424475 .. 10424660 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

mRNA sequence

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Coding sequence (CDS)

ATGGATCACCAGAAGACCGCCAATGGAAGGATTTATGCAACTGCACGAAAATCGGAAAAAAAAATTCCACAACGTACTAGGGATAAGAGTGTTGACATCATGATAACGTCAGCTTGGCGTCACGATATCGTTAGCCTGGCGTCAGAAGGCAATAAGGAGAGGTGCGCTAGCTCGACTTGGCGGTAG

Protein sequence

MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTWR*
Homology
[Close]
BLAST of Csa1G166840 vs. TrEMBL
Match: A0A0A0LSR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166840 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.5e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of Csa1G166840 vs. NCBI nr
Match: gi|700209859|gb|KGN64955.1| (hypothetical protein Csa_1G166840 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60
          MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW
Sbjct: 1  MDHQKTANGRIYATARKSEKKIPQRTRDKSVDIMITSAWRHDIVSLASEGNKERCASSTW 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:
BLAST of Csa1G166840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSR6_CUCSA7.5e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166840 PE=4 SV=1[more]
BLAST of Csa1G166840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209859|gb|KGN64955.1|1.1e-26100.00hypothetical protein Csa_1G166840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G166840.1Csa1G166840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G166840Silver-seed gourdcarcuB0000
Csa1G166840Silver-seed gourdcarcuB0931
Csa1G166840Silver-seed gourdcarcuB0998
Csa1G166840Watermelon (97103) v2cuwmbB009
Csa1G166840Watermelon (97103) v2cuwmbB018
Csa1G166840Watermelon (97103) v2cuwmbB026
Csa1G166840Wax gourdcuwgoB049
Csa1G166840Cucumber (Chinese Long) v2cucuB016
Csa1G166840Cucumber (Gy14) v1cgycuB342
Csa1G166840Cucumber (Gy14) v1cgycuB457
Csa1G166840Cucurbita maxima (Rimu)cmacuB222
Csa1G166840Cucurbita maxima (Rimu)cmacuB399
Csa1G166840Cucurbita maxima (Rimu)cmacuB579
Csa1G166840Cucurbita moschata (Rifu)cmocuB206
Csa1G166840Cucurbita moschata (Rifu)cmocuB383
Csa1G166840Cucurbita moschata (Rifu)cmocuB569
Csa1G166840Melon (DHL92) v3.5.1cumeB015
Csa1G166840Melon (DHL92) v3.5.1cumeB068
Csa1G166840Watermelon (Charleston Gray)cuwcgB006
Csa1G166840Watermelon (Charleston Gray)cuwcgB022
Csa1G166840Watermelon (Charleston Gray)cuwcgB028
Csa1G166840Watermelon (97103) v1cuwmB007
Csa1G166840Watermelon (97103) v1cuwmB042
Csa1G166840Watermelon (97103) v1cuwmB057
Csa1G166840Watermelon (97103) v1cuwmB065
Csa1G166840Cucurbita pepo (Zucchini)cpecuB003
Csa1G166840Cucurbita pepo (Zucchini)cpecuB020
Csa1G166840Cucurbita pepo (Zucchini)cpecuB848
Csa1G166840Bottle gourd (USVL1VR-Ls)culsiB005
Csa1G166840Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G166840Bottle gourd (USVL1VR-Ls)culsiB021
Csa1G166840Bottle gourd (USVL1VR-Ls)culsiB049
Csa1G166840Cucumber (Gy14) v2cgybcuB001
Csa1G166840Melon (DHL92) v3.6.1cumedB010
Csa1G166840Melon (DHL92) v3.6.1cumedB061
Csa1G166840Melon (DHL92) v3.6.1cumedB078